We present a semi-analytical method to investigate the systematic effects and statistical uncertainties of the calculated angular power spectrum when incomplete spherical maps are used. The computed power spectrum suffers in particular a loss of angular frequency resolution, which can be written as delta_l ~ pi/gamma_max, where gamma_max is the effective maximum extent of the partial spherical maps. We propose a correction algorithm to reduce systematic effects on the estimated C_l, as obtained from the partial map projection on the spherical harmonic Ylm(l,m) basis. We have derived near optimal bands and weighting functions in l-space for power spectrum calculation using small maps, and a correction algorithm for partially masked spherical maps that contain information on the angular correlations on all scales.