In this article, we analyze the propagation of Wigner measures of a family of solutions to a system of semi-classical pseudodifferential equations presenting eigenvalues crossings on hypersurfaces. We prove the propagation along classical trajectories under a geometric condition which is satisfied for example as soon as the Hamiltonian vector fields are transverse or tangent at finite order to the crossing set. We derive resolvent estimates for semi-classical Schrodinger operator with matrix-valued potential under a geometric condition of the same type on the crossing set and we analyze examples of degenerate situations where one can prove transfers between the modes.