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In light of the recently published complete set of statistically correct GJ methods for discrete-time thermodynamics, we revise the differential operator splitting method for the Langevin equation in order to comply with the basic GJ thermodynamic sampling features, namely the Boltzmann distribution and Einstein diffusion, in linear systems. This revision, which is based on the introduction of time scaling along with flexibility of a discrete-time velocity attenuation parameter, provides a direct link between the ABO splitting formalism and the GJ methods. This link brings about the conclusion that any GJ method has at least weak second order accuracy in the applied time step. It further helps identify a novel half-step velocity, which simultaneously produces both correct kinetic statistics and correct transport measures for any of the statistically sound GJ methods. Explicit algorithmic expressions are given for the integration of the new half-step velocity into the GJ set of methods. Numerical simulations, including quantum-based molecular dynamics (QMD) using the QMD suite LATTE, highlight the discussed properties of the algorithms as well as exhibit the direct application of robust, time step independent stochastic integrators to quantum-based molecular dynamics.
We expand on the previously published Gr{o}nbech-Jensen Farago (GJF) thermostat, which is a thermodynamically sound variation on the St{o}rmer-Verlet algorithm for simulating discrete-time Langevin equations. The GJF method has been demonstrated to g
When simulating molecular systems using deterministic equations of motion (e.g., Newtonian dynamics), such equations are generally numerically integrated according to a well-developed set of algorithms that share commonly agreed-upon desirable proper
We study numerical methods for the generalized Langevin equation (GLE) with a positive Prony series memory kernel, in which case the GLE can be written in an extended variable Markovian formalism. We propose a new splitting method that is easy to imp
We present results on the ballistic and diffusive behavior of the Langevin dynamics in a periodic potential that is driven away from equilibrium by a space-time periodic driving force, extending some of the results obtained by Collet and Martinez. In
We show how to derive a simple integrator for the Langevin equation and illustrate how it is possible to check the accuracy of the obtained distribution on the fly, using the concept of effective energy introduced in a recent paper [J. Chem. Phys. 12