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Graph Neural Networks (GNNs) are effective in many applications. Still, there is a limited understanding of the effect of common graph structures on the learning process of GNNs. In this work, we systematically study the impact of community structure on the performance of GNNs in semi-supervised node classification on graphs. Following an ablation study on six datasets, we measure the performance of GNNs on the original graphs, and the change in performance in the presence and the absence of community structure. Our results suggest that communities typically have a major impact on the learning process and classification performance. For example, in cases where the majority of nodes from one community share a single classification label, breaking up community structure results in a significant performance drop. On the other hand, for cases where labels show low correlation with communities, we find that the graph structure is rather irrelevant to the learning process, and a feature-only baseline becomes hard to beat. With our work, we provide deeper insights in the abilities and limitations of GNNs, including a set of general guidelines for model selection based on the graph structure.
Graph neural networks (GNNs) achieve remarkable success in graph-based semi-supervised node classification, leveraging the information from neighboring nodes to improve the representation learning of target node. The success of GNNs at node classific
Graph neural networks (GNN) have been ubiquitous in graph learning tasks such as node classification. Most of GNN methods update the node embedding iteratively by aggregating its neighbors information. However, they often suffer from negative disturb
Data augmentation aims to generate new and synthetic features from the original data, which can identify a better representation of data and improve the performance and generalizability of downstream tasks. However, data augmentation for graph-based
Classification tasks based on feature vectors can be significantly improved by including within deep learning a graph that summarises pairwise relationships between the samples. Intuitively, the graph acts as a conduit to channel and bias the inferen
We study the problem of semi-supervised learning on graphs, for which graph neural networks (GNNs) have been extensively explored. However, most existing GNNs inherently suffer from the limitations of over-smoothing, non-robustness, and weak-generali