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We present a self-consistent Bayesian formalism to sample the primordial density fields compatible with a set of dark matter density tracers after cosmic evolution observed in redshift space. Previous works on density reconstruction did not self-consistently consider redshift space distortions or included an additional iterative distortion correction step. We present here the analytic solution of coherent flows within a Hamiltonian Monte Carlo posterior sampling of the primordial density field. We test our method within the Zeldovich approximation, presenting also an analytic solution including tidal fields and spherical collapse on small scales using augmented Lagrangian perturbation theory. Our resulting reconstructed fields are isotropic and their power spectra are unbiased compared to the true one defined by our mock observations. Novel algorithmic implementations are introduced regarding the mass assignment kernels when defining the dark matter density field and optimization of the time step in the Hamiltonian equations of motions. Our algorithm, dubbed barcode, promises to be specially suited for analysis of the dark matter cosmic web down to scales of a few Megaparsecs. This large scale structure is implied by the observed spatial distribution of galaxy clusters --- such as obtained from X-ray, SZ or weak lensing surveys --- as well as that of the intergalactic medium sampled by the Lyman alpha forest or perhaps even by deep hydrogen intensity mapping. In these cases, virialized motions are negligible, and the tracers cannot be modeled as point-like objects. It could be used in all of these contexts as a baryon acoustic oscillation reconstruction algorithm.
We perform an analysis of the three-dimensional cosmic matter density field traced by galaxies of the SDSS-III/BOSS galaxy sample. The systematic-free nature of this analysis is confirmed by two elements: the successful cross-correlation with the gra
Models defined by stochastic differential equations (SDEs) allow for the representation of random variability in dynamical systems. The relevance of this class of models is growing in many applied research areas and is already a standard tool to mode
We propose a framework for Bayesian non-parametric estimation of the rate at which new infections occur assuming that the epidemic is partially observed. The developed methodology relies on modelling the rate at which new infections occur as a functi
To build a flexible and interpretable model for document analysis, we develop deep autoencoding topic model (DATM) that uses a hierarchy of gamma distributions to construct its multi-stochastic-layer generative network. In order to provide scalable p
The mapping of dark matter clustering from real space to redshift space introduces the anisotropic property to the measured density power spectrum in redshift space, known as the redshift space distortion effect. The mapping formula is intrinsically