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We present a computational approach for solving reaction-diffusion equations on evolving surfaces which have been obtained from cell image data. It is based on finite element spaces defined on surface triangulations extracted from time series of 3D images. A model for the transport of material between the subsequent surfaces is required where we postulate a velocity in normal direction. We apply the technique to image data obtained from a spreading neutrophil cell. By simulating FRAP experiments we investigate the impact of the evolving geometry on the recovery. We find that for idealised FRAP conditions, changes in membrane geometry, easily account for differences of $times 10$ in recovery half-times, which shows that experimentalists must take great care when interpreting membrane photobleaching results. We also numerically solve an activator -- depleted substrate system and report on the effect of the membrane movement on the pattern evolution.
Reaction-diffusion equations are widely used as the governing evolution equations for modeling many physical, chemical, and biological processes. Here we derive reaction-diffusion equations to model transport with reactions on a one-dimensional domai
Among the main actors of organism development there are morphogens, which are signaling molecules diffusing in the developing organism and acting on cells to produce local responses. Growth is thus determined by the distribution of such signal. Meanw
In this paper, we extend the class of kernel methods, the so-called diffusion maps (DM) and ghost point diffusion maps (GPDM), to solve the time-dependent advection-diffusion PDE on unknown smooth manifolds without and with boundaries. The core idea
We introduce a method-of-lines formulation of the closest point method, a numerical technique for solving partial differential equations (PDEs) defined on surfaces. This is an embedding method, which uses an implicit representation of the surface in
In this paper, we introduce and analyse a surface finite element discretization of advection-diffusion equations with uncertain coefficients on evolving hypersurfaces. After stating unique solvability of the resulting semi-discrete problem, we prove