We present the correlation of low energy CP phases, both Dirac and Majorana, and the lepton asymmetry for the baryon asymmetry in the universe, with a certain class of Yukawa matrices that consist of two right-handed neutrinos and include one texture zero in themselves. For cases in which the amount of the lepton asymmetry $Y_L$ turns out to be proportional to $theta_{13}^2$, we consider the relation between two types of CP phases and the relation of $Y_L$ versus the Jarlskog invariant or the amplitude of neutrinoless double beta decay as $theta_{13}$ varies.