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Eformer: Edge Enhancement based Transformer for Medical Image Denoising

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 Added by Tanish Mittal
 Publication date 2021
and research's language is English




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In this work, we present Eformer - Edge enhancement based transformer, a novel architecture that builds an encoder-decoder network using transformer blocks for medical image denoising. Non-overlapping window-based self-attention is used in the transformer block that reduces computational requirements. This work further incorporates learnable Sobel-Feldman operators to enhance edges in the image and propose an effective way to concatenate them in the intermediate layers of our architecture. The experimental analysis is conducted by comparing deterministic learning and residual learning for the task of medical image denoising. To defend the effectiveness of our approach, our model is evaluated on the AAPM-Mayo Clinic Low-Dose CT Grand Challenge Dataset and achieves state-of-the-art performance, $i.e.$, 43.487 PSNR, 0.0067 RMSE, and 0.9861 SSIM. We believe that our work will encourage more research in transformer-based architectures for medical image denoising using residual learning.



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203 - Hu Cao , Yueyue Wang , Joy Chen 2021
In the past few years, convolutional neural networks (CNNs) have achieved milestones in medical image analysis. Especially, the deep neural networks based on U-shaped architecture and skip-connections have been widely applied in a variety of medical image tasks. However, although CNN has achieved excellent performance, it cannot learn global and long-range semantic information interaction well due to the locality of the convolution operation. In this paper, we propose Swin-Unet, which is an Unet-like pure Transformer for medical image segmentation. The tokenized image patches are fed into the Transformer-based U-shaped Encoder-Decoder architecture with skip-connections for local-global semantic feature learning. Specifically, we use hierarchical Swin Transformer with shifted windows as the encoder to extract context features. And a symmetric Swin Transformer-based decoder with patch expanding layer is designed to perform the up-sampling operation to restore the spatial resolution of the feature maps. Under the direct down-sampling and up-sampling of the inputs and outputs by 4x, experiments on multi-organ and cardiac segmentation tasks demonstrate that the pure Transformer-based U-shaped Encoder-Decoder network outperforms those methods with full-convolution or the combination of transformer and convolution. The codes and trained models will be publicly available at https://github.com/HuCaoFighting/Swin-Unet.
In the last decade, convolutional neural networks (ConvNets) have dominated and achieved state-of-the-art performances in a variety of medical imaging applications. However, the performances of ConvNets are still limited by lacking the understanding of long-range spatial relations in an image. The recently proposed Vision Transformer (ViT) for image classification uses a purely self-attention-based model that learns long-range spatial relations to focus on the relevant parts of an image. Nevertheless, ViT emphasizes the low-resolution features because of the consecutive downsamplings, result in a lack of detailed localization information, making it unsuitable for image registration. Recently, several ViT-based image segmentation methods have been combined with ConvNets to improve the recovery of detailed localization information. Inspired by them, we present ViT-V-Net, which bridges ViT and ConvNet to provide volumetric medical image registration. The experimental results presented here demonstrate that the proposed architecture achieves superior performance to several top-performing registration methods.
With the development of deep encoder-decoder architectures and large-scale annotated medical datasets, great progress has been achieved in the development of automatic medical image segmentation. Due to the stacking of convolution layers and the consecutive sampling operations, existing standard models inevitably encounter the information recession problem of feature representations, which fails to fully model the global contextual feature dependencies. To overcome the above challenges, this paper proposes a novel Transformer based medical image semantic segmentation framework called TransAttUnet, in which the multi-level guided attention and multi-scale skip connection are jointly designed to effectively enhance the functionality and flexibility of traditional U-shaped architecture. Inspired by Transformer, a novel self-aware attention (SAA) module with both Transformer Self Attention (TSA) and Global Spatial Attention (GSA) is incorporated into TransAttUnet to effectively learn the non-local interactions between encoder features. In particular, we also establish additional multi-scale skip connections between decoder blocks to aggregate the different semantic-scale upsampling features. In this way, the representation ability of multi-scale context information is strengthened to generate discriminative features. Benefitting from these complementary components, the proposed TransAttUnet can effectively alleviate the loss of fine details caused by the information recession problem, improving the diagnostic sensitivity and segmentation quality of medical image analysis. Extensive experiments on multiple medical image segmentation datasets of different imaging demonstrate that our method consistently outperforms the state-of-the-art baselines.
Most compressive sensing (CS) reconstruction methods can be divided into two categories, i.e. model-based methods and classical deep network methods. By unfolding the iterative optimization algorithm for model-based methods onto networks, deep unfolding methods have the good interpretation of model-based methods and the high speed of classical deep network methods. In this paper, to solve the visual image CS problem, we propose a deep unfolding model dubbed AMP-Net. Rather than learning regularization terms, it is established by unfolding the iterative denoising process of the well-known approximate message passing algorithm. Furthermore, AMP-Net integrates deblocking modules in order to eliminate the blocking artifacts that usually appear in CS of visual images. In addition, the sampling matrix is jointly trained with other network parameters to enhance the reconstruction performance. Experimental results show that the proposed AMP-Net has better reconstruction accuracy than other state-of-the-art methods with high reconstruction speed and a small number of network parameters.
246 - Cheng Zhang , Qingsen Yan , Yu zhu 2020
The captured images under low light conditions often suffer insufficient brightness and notorious noise. Hence, low-light image enhancement is a key challenging task in computer vision. A variety of methods have been proposed for this task, but these methods often failed in an extreme low-light environment and amplified the underlying noise in the input image. To address such a difficult problem, this paper presents a novel attention-based neural network to generate high-quality enhanced low-light images from the raw sensor data. Specifically, we first employ attention strategy (i.e. channel attention and spatial attention modules) to suppress undesired chromatic aberration and noise. The channel attention module guides the network to refine redundant colour features. The spatial attention module focuses on denoising by taking advantage of the non-local correlation in the image. Furthermore, we propose a new pooling layer, called inverted shuffle layer, which adaptively selects useful information from previous features. Extensive experiments demonstrate the superiority of the proposed network in terms of suppressing the chromatic aberration and noise artifacts in enhancement, especially when the low-light image has severe noise.
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