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Register a new userCoconut trees detection and segmentation in aerial imagery using mask region-based convolution neural network
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Food resources face severe damages under extraordinary situations of catastrophes such as earthquakes, cyclones, and tsunamis. Under such scenarios, speedy assessment of food resources from agricultural land is critical as it supports aid activity in the disaster hit areas. In this article, a deep learning approach is presented for the detection and segmentation of coconut tress in aerial imagery provided through the AI competition organized by the World Bank in collaboration with OpenAerialMap and WeRobotics. Maked Region-based Convolutional Neural Network approach was used identification and segmentation of coconut trees. For the segmentation task, Mask R-CNN model with ResNet50 and ResNet1010 based architectures was used. Several experiments with different configuration parameters were performed and the best configuration for the detection of coconut trees with more than 90% confidence factor was reported. For the purpose of evaluation, Microsoft COCO dataset evaluation metric namely mean average precision (mAP) was used. An overall 91% mean average precision for coconut trees detection was achieved.
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Automatic building extraction from aerial imagery has several applications in urban planning, disaster management, and change detection. In recent years, several works have adopted deep convolutional neural networks (CNNs) for building extraction, since they produce rich features that are invariant against lighting conditions, shadows, etc. Although several advances have been made, building extraction from aerial imagery still presents multiple challenges. Most of the deep learning segmentation methods optimize the per-pixel loss with respect to the ground truth without knowledge of the context. This often leads to imperfect outputs that may lead to missing or unrefined regions. In this work, we propose a novel loss function combining both adversarial and cross-entropy losses that learn to understand both local and global contexts for semantic segmentation. The newly proposed loss function deployed on the DeepLab v3+ network obtains state-of-the-art results on the Massachusetts buildings dataset. The loss function improves the structure and refines the edges of buildings without requiring any of the commonly used post-processing methods, such as Conditional Random Fields. We also perform ablation studies to understand the impact of the adversarial loss. Finally, the proposed method achieves a relaxed F1 score of 95.59% on the Massachusetts buildings dataset compared to the previous best F1 of 94.88%.
Automatic airway segmentation from chest computed tomography (CT) scans plays an important role in pulmonary disease diagnosis and computer-assisted therapy. However, low contrast at peripheral branches and complex tree-like structures remain as two mainly challenges for airway segmentation. Recent research has illustrated that deep learning methods perform well in segmentation tasks. Motivated by these works, a coarse-to-fine segmentation framework is proposed to obtain a complete airway tree. Our framework segments the overall airway and small branches via the multi-information fusion convolution neural network (Mif-CNN) and the CNN-based region growing, respectively. In Mif-CNN, atrous spatial pyramid pooling (ASPP) is integrated into a u-shaped network, and it can expend the receptive field and capture multi-scale information. Meanwhile, boundary and location information are incorporated into semantic information. These information are fused to help Mif-CNN utilize additional context knowledge and useful features. To improve the performance of the segmentation result, the CNN-based region growing method is designed to focus on obtaining small branches. A voxel classification network (VCN), which can entirely capture the rich information around each voxel, is applied to classify the voxels into airway and non-airway. In addition, a shape reconstruction method is used to refine the airway tree.
Colorectal cancer is a leading cause of death worldwide. However, early diagnosis dramatically increases the chances of survival, for which it is crucial to identify the tumor in the body. Since its imaging uses high-resolution techniques, annotating the tumor is time-consuming and requires particular expertise. Lately, methods built upon Convolutional Neural Networks(CNNs) have proven to be at par, if not better in many biomedical segmentation tasks. For the task at hand, we propose another CNN-based approach, which uses atrous convolutions and residual connections besides the conventional filters. The training and inference were made using an efficient patch-based approach, which significantly reduced unnecessary computations. The proposed AtResUNet was trained on the DigestPath 2019 Challenge dataset for colorectal cancer segmentation with results having a Dice Coefficient of 0.748.
Embryo quality assessment based on morphological attributes is important for achieving higher pregnancy rates from in vitro fertilization (IVF). The accurate segmentation of the embryos inner cell mass (ICM) and trophectoderm epithelium (TE) is important, as these parameters can help to predict the embryo viability and live birth potential. However, segmentation of the ICM and TE is difficult due to variations in their shape and similarities in their textures, both with each other and with their surroundings. To tackle this problem, a deep neural network (DNN) based segmentation approach was implemented. The DNN can identify the ICM region with 99.1% accuracy, 94.9% precision, 93.8% recall, a 94.3% Dice Coefficient, and a 89.3% Jaccard Index. It can extract the TE region with 98.3% accuracy, 91.8% precision, 93.2% recall, a 92.5% Dice Coefficient, and a 85.3% Jaccard Index.
We present a joint graph convolution-image convolution neural network as our submission to the Brain Tumor Segmentation (BraTS) 2021 challenge. We model each brain as a graph composed of distinct image regions, which is initially segmented by a graph neural network (GNN). Subsequently, the tumorous volume identified by the GNN is further refined by a simple (voxel) convolutional neural network (CNN), which produces the final segmentation. This approach captures both global brain feature interactions via the graphical representation and local image details through the use of convolutional filters. We find that the GNN component by itself can effectively identify and segment the brain tumors. The addition of the CNN further improves the median performance of the model by 2 percent across all metrics evaluated. On the validation set, our joint GNN-CNN model achieves mean Dice scores of 0.89, 0.81, 0.73 and mean Hausdorff distances (95th percentile) of 6.8, 12.6, 28.2mm on the whole tumor, core tumor, and enhancing tumor, respectively.
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