Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userExact and Approximate Hierarchical Clustering Using A*
106
0
0.0
(
0
)
Added by
Sebastian Macaluso
Publication date
2021
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
Hierarchical clustering is a critical task in numerous domains. Many approaches are based on heuristics and the properties of the resulting clusterings are studied post hoc. However, in several applications, there is a natural cost function that can be used to characterize the quality of the clustering. In those cases, hierarchical clustering can be seen as a combinatorial optimization problem. To that end, we introduce a new approach based on A* search. We overcome the prohibitively large search space by combining A* with a novel emph{trellis} data structure. This combination results in an exact algorithm that scales beyond previous state of the art, from a search space with $10^{12}$ trees to $10^{15}$ trees, and an approximate algorithm that improves over baselines, even in enormous search spaces that contain more than $10^{1000}$ trees. We empirically demonstrate that our method achieves substantially higher quality results than baselines for a particle physics use case and other clustering benchmarks. We describe how our method provides significantly improved theoretical bounds on the time and space complexity of A* for clustering.
rate research
Read More
Hierarchical clustering is a fundamental task often used to discover meaningful structures in data, such as phylogenetic trees, taxonomies of concepts, subtypes of cancer, and cascades of particle decays in particle physics. Typically approximate algorithms are used for inference due to the combinatorial number of possible hierarchical clusterings. In contrast to existing methods, we present novel dynamic-programming algorithms for emph{exact} inference in hierarchical clustering based on a novel trellis data structure, and we prove that we can exactly compute the partition function, maximum likelihood hierarchy, and marginal probabilities of sub-hierarchies and clusters. Our algorithms scale in time and space proportional to the powerset of $N$ elements which is super-exponentially more efficient than explicitly considering each of the (2N-3)!! possible hierarchies. Also, for larger datasets where our exact algorithms become infeasible, we introduce an approximate algorithm based on a sparse trellis that compares well to other benchmarks. Exact methods are relevant to data analyses in particle physics and for finding correlations among gene expression in cancer genomics, and we give examples in both areas, where our algorithms outperform greedy and beam search baselines. In addition, we consider Dasguptas cost with synthetic data.
In this paper we consider two metric covering/clustering problems - textit{Minimum Cost Covering Problem} (MCC) and $k$-clustering. In the MCC problem, we are given two point sets $X$ (clients) and $Y$ (servers), and a metric on $X cup Y$. We would like to cover the clients by balls centered at the servers. The objective function to minimize is the sum of the $alpha$-th power of the radii of the balls. Here $alpha geq 1$ is a parameter of the problem (but not of a problem instance). MCC is closely related to the $k$-clustering problem. The main difference between $k$-clustering and MCC is that in $k$-clustering one needs to select $k$ balls to cover the clients. For any $eps > 0$, we describe quasi-polynomial time $(1 + eps)$ approximation algorithms for both of the problems. However, in case of $k$-clustering the algorithm uses $(1 + eps)k$ balls. Prior to our work, a $3^{alpha}$ and a ${c}^{alpha}$ approximation were achieved by polynomial-time algorithms for MCC and $k$-clustering, respectively, where $c > 1$ is an absolute constant. These two problems are thus interesting examples of metric covering/clustering problems that admit $(1 + eps)$-approximation (using $(1+eps)k$ balls in case of $k$-clustering), if one is willing to settle for quasi-polynomial time. In contrast, for the variant of MCC where $alpha$ is part of the input, we show under standard assumptions that no polynomial time algorithm can achieve an approximation factor better than $O(log |X|)$ for $alpha geq log |X|$.
In this paper we make two novel contributions to hierarchical clustering. First, we introduce an anomalous pattern initialisation method for hierarchical clustering algorithms, called A-Ward, capable of substantially reducing the time they take to converge. This method generates an initial partition with a sufficiently large number of clusters. This allows the cluster merging process to start from this partition rather than from a trivial partition composed solely of singletons. Our second contribution is an extension of the Ward and Ward p algorithms to the situation where the feature weight exponent can differ from the exponent of the Minkowski distance. This new method, called A-Ward pb{eta} , is able to generate a much wider variety of clustering solutions. We also demonstrate that its parameters can be estimated reasonably well by using a cluster validity index. We perform numerous experiments using data sets with two types of noise, insertion of noise features and blurring within-cluster values of some features. These experiments allow us to conclude: (i) our anomalous pattern initialisation method does indeed reduce the time a hierarchical clustering algorithm takes to complete, without negatively impacting its cluster recovery ability; (ii) A-Ward pb{eta} provides better cluster recovery than both Ward and Ward p.
Hierarchical clustering is a widely used approach for clustering datasets at multiple levels of granularity. Despite its popularity, existing algorithms such as hierarchical agglomerative clustering (HAC) are limited to the offline setting, and thus require the entire dataset to be available. This prohibits their use on large datasets commonly encountered in modern learning applications. In this paper, we consider hierarchical clustering in the online setting, where points arrive one at a time. We propose two algorithms that seek to optimize the Moseley and Wang (MW) revenue function, a variant of the Dasgupta cost. These algorithms offer different tradeoffs between efficiency and MW revenue performance. The first algorithm, OTD, is a highly efficient Online Top Down algorithm which provably achieves a 1/3-approximation to the MW revenue under a data separation assumption. The second algorithm, OHAC, is an online counterpart to offline HAC, which is known to yield a 1/3-approximation to the MW revenue, and produce good quality clusters in practice. We show that OHAC approximates offline HAC by leveraging a novel split-merge procedure. We empirically show that OTD and OHAC offer significant efficiency and cluster quality gains respectively over baselines.
We present a hierarchical maximum-margin clustering method for unsupervised data analysis. Our method extends beyond flat maximum-margin clustering, and performs clustering recursively in a top-down manner. We propose an effective greedy splitting criteria for selecting which cluster to split next, and employ regularizers that enforce feature sharing/competition for capturing data semantics. Experimental results obtained on four standard datasets show that our method outperforms flat and hierarchical clustering baselines, while forming clean and semantically meaningful cluster hierarchies.
suggested questions
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
