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Register a new userMultistage BiCross encoder for multilingual access to COVID-19 health information
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Added by
Iknoor Singh
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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The Coronavirus (COVID-19) pandemic has led to a rapidly growing infodemic of health information online. This has motivated the need for accurate semantic search and retrieval of reliable COVID-19 information across millions of documents, in multiple languages. To address this challenge, this paper proposes a novel high precision and high recall neural Multistage BiCross encoder approach. It is a sequential three-stage ranking pipeline which uses the Okapi BM25 retrieval algorithm and transformer-based bi-encoder and cross-encoder to effectively rank the documents with respect to the given query. We present experimental results from our participation in the Multilingual Information Access (MLIA) shared task on COVID-19 multilingual semantic search. The independently evaluated MLIA results validate our approach and demonstrate that it outperforms other state-of-the-art approaches according to nearly all evaluation metrics in cases of both monolingual and bilingual runs.
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Every day, more people are becoming infected and dying from exposure to COVID-19. Some countries in Europe like Spain, France, the UK and Italy have suffered particularly badly from the virus. Others such as Germany appear to have coped extremely well. Both health professionals and the general public are keen to receive up-to-date information on the effects of the virus, as well as treatments that have proven to be effective. In cases where language is a barrier to access of pertinent information, machine translation (MT) may help people assimilate information published in different languages. Our MT systems trained on COVID-19 data are freely available for anyone to use to help translate information published in German, French, Italian, Spanish into English, as well as the reverse direction.
We present CAiRE-COVID, a real-time question answering (QA) and multi-document summarization system, which won one of the 10 tasks in the Kaggle COVID-19 Open Research Dataset Challenge, judged by medical experts. Our system aims to tackle the recent challenge of mining the numerous scientific articles being published on COVID-19 by answering high priority questions from the community and summarizing salient question-related information. It combines information extraction with state-of-the-art QA and query-focused multi-document summarization techniques, selecting and highlighting evidence snippets from existing literature given a query. We also propose query-focused abstractive and extractive multi-document summarization methods, to provide more relevant information related to the question. We further conduct quantitative experiments that show consistent improvements on various metrics for each module. We have launched our website CAiRE-COVID for broader use by the medical community, and have open-sourced the code for our system, to bootstrap further study by other researches.
The COVID-19 pandemic due to the SARS-CoV-2 coronavirus has directly impacted the public health and economy worldwide. To overcome this problem, countries have adopted different policies and non-pharmaceutical interventions for controlling the spread of the virus. This paper proposes the COVID-ABS, a new SEIR (Susceptible-Exposed-Infected-Recovered) agent-based model that aims to simulate the pandemic dynamics using a society of agents emulating people, business and government. Seven different scenarios of social distancing interventions were analyzed, with varying epidemiological and economic effects: (1) do nothing, (2) lockdown, (3) conditional lockdown, (4) vertical isolation, (5) partial isolation, (6) use of face masks, and (7) use of face masks together with 50% of adhesion to social isolation. In the impossibility of implementing scenarios with lockdown, which present the lowest number of deaths and highest impact on the economy, scenarios combining the use of face masks and partial isolation can be the more realistic for implementation in terms of social cooperation. The COVID-ABS model was implemented in Python programming language, with source code publicly available. The model can be easily extended to other societies by changing the input parameters, as well as allowing the creation of a multitude of other scenarios. Therefore, it is a useful tool to assist politicians and health authorities to plan their actions against the COVID-19 epidemic.
A dataset of COVID-19-related scientific literature is compiled, combining the articles from several online libraries and selecting those with open access and full text available. Then, hierarchical nonnegative matrix factorization is used to organize literature related to the novel coronavirus into a tree structure that allows researchers to search for relevant literature based on detected topics. We discover eight major latent topics and 52 granular subtopics in the body of literature, related to vaccines, genetic structure and modeling of the disease and patient studies, as well as related diseases and virology. In order that our tool may help current researchers, an interactive website is created that organizes available literature using this hierarchical structure.
The rapid advancement of technology in online communication via social media platforms has led to a prolific rise in the spread of misinformation and fake news. Fake news is especially rampant in the current COVID-19 pandemic, leading to people believing in false and potentially harmful claims and stories. Detecting fake news quickly can alleviate the spread of panic, chaos and potential health hazards. We developed a two stage automated pipeline for COVID-19 fake news detection using state of the art machine learning models for natural language processing. The first model leverages a novel fact checking algorithm that retrieves the most relevant facts concerning user claims about particular COVID-19 claims. The second model verifies the level of truth in the claim by computing the textual entailment between the claim and the true facts retrieved from a manually curated COVID-19 dataset. The dataset is based on a publicly available knowledge source consisting of more than 5000 COVID-19 false claims and verified explanations, a subset of which was internally annotated and cross-validated to train and evaluate our models. We evaluate a series of models based on classical text-based features to more contextual Transformer based models and observe that a model pipeline based on BERT and ALBERT for the two stages respectively yields the best results.
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