We have systematically investigated the magnetic moments of spin-$frac{1}{2}$ doubly charmed baryons in the framework of the heavy baryon chiral perturbation theory. In this paper, one loop corrections with intermediate spin-$frac{1}{2}$ and spin-$frac{3}{2}$ doubly charmed baryon states are considered. The numerical results are calculated to next-to-leading order: $mu_{Xi^{++}_{cc}}=0.35mu_{N}$, $mu_{Xi^{+}_{cc}}=0.62mu_{N}$, $mu_{Omega^{+}_{cc}}=0.41mu_{N}$. Our results may be useful for future experiment and chiral extrapolation of the lattice QCD.