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Register a new userApplications of Online Nonnegative Matrix Factorization to Image and Time-Series Data
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Added by
Hanbaek Lyu
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Online nonnegative matrix factorization (ONMF) is a matrix factorization technique in the online setting where data are acquired in a streaming fashion and the matrix factors are updated each time. This enables factor analysis to be performed concurrently with the arrival of new data samples. In this article, we demonstrate how one can use online nonnegative matrix factorization algorithms to learn joint dictionary atoms from an ensemble of correlated data sets. We propose a temporal dictionary learning scheme for time-series data sets, based on ONMF algorithms. We demonstrate our dictionary learning technique in the application contexts of historical temperature data, video frames, and color images.
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Online Matrix Factorization (OMF) is a fundamental tool for dictionary learning problems, giving an approximate representation of complex data sets in terms of a reduced number of extracted features. Convergence guarantees for most of the OMF algorithms in the literature assume independence between data matrices, and the case of dependent data streams remains largely unexplored. In this paper, we show that a non-convex generalization of the well-known OMF algorithm for i.i.d. stream of data in citep{mairal2010online} converges almost surely to the set of critical points of the expected loss function, even when the data matrices are functions of some underlying Markov chain satisfying a mild mixing condition. This allows one to extract features more efficiently from dependent data streams, as there is no need to subsample the data sequence to approximately satisfy the independence assumption. As the main application, by combining online non-negative matrix factorization and a recent MCMC algorithm for sampling motifs from networks, we propose a novel framework of Network Dictionary Learning, which extracts ``network dictionary patches from a given network in an online manner that encodes main features of the network. We demonstrate this technique and its application to network denoising problems on real-world network data.
Inthischapterwediscusshowtolearnanoptimalmanifoldpresentationto regularize nonegative matrix factorization (NMF) for data representation problems. NMF,whichtriestorepresentanonnegativedatamatrixasaproductoftwolowrank nonnegative matrices, has been a popular method for data representation due to its ability to explore the latent part-based structure of data. Recent study shows that lots of data distributions have manifold structures, and we should respect the manifold structure when the data are represented. Recently, manifold regularized NMF used a nearest neighbor graph to regulate the learning of factorization parameter matrices and has shown its advantage over traditional NMF methods for data representation problems. However, how to construct an optimal graph to present the manifold prop- erly remains a difficultproblem due to the graph modelselection, noisy features, and nonlinear distributed data. In this chapter, we introduce three effective methods to solve these problems of graph construction for manifold regularized NMF. Multiple graph learning is proposed to solve the problem of graph model selection, adaptive graph learning via feature selection is proposed to solve the problem of constructing a graph from noisy features, while multi-kernel learning-based graph construction is used to solve the problem of learning a graph from nonlinearly distributed data.
Fully unsupervised topic models have found fantastic success in document clustering and classification. However, these models often suffer from the tendency to learn less-than-meaningful or even redundant topics when the data is biased towards a set of features. For this reason, we propose an approach based upon the nonnegative matrix factorization (NMF) model, deemed textit{Guided NMF}, that incorporates user-designed seed word supervision. Our experimental results demonstrate the promise of this model and illustrate that it is competitive with other methods of this ilk with only very little supervision information.
ICU mortality risk prediction is a tough yet important task. On one hand, due to the complex temporal data collected, it is difficult to identify the effective features and interpret them easily; on the other hand, good prediction can help clinicians take timely actions to prevent the mortality. These correspond to the interpretability and accuracy problems. Most existing methods lack of the interpretability, but recently Subgraph Augmented Nonnegative Matrix Factorization (SANMF) has been successfully applied to time series data to provide a path to interpret the features well. Therefore, we adopted this approach as the backbone to analyze the patient data. One limitation of the raw SANMF method is its poor prediction ability due to its unsupervised nature. To deal with this problem, we proposed a supervised SANMF algorithm by integrating the logistic regression loss function into the NMF framework and solved it with an alternating optimization procedure. We used the simulation data to verify the effectiveness of this method, and then we applied it to ICU mortality risk prediction and demonstrated its superiority over other conventional supervised NMF methods.
We present a general-purpose data compression algorithm, Regularized L21 Semi-NonNegative Matrix Factorization (L21 SNF). L21 SNF provides robust, parts-based compression applicable to mixed-sign data for which high fidelity, individualdata point reconstruction is paramount. We derive a rigorous proof of convergenceof our algorithm. Through experiments, we show the use-case advantages presentedby L21 SNF, including application to the compression of highly overdeterminedsystems encountered broadly across many general machine learning processes.
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