Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userSubject-Aware Contrastive Learning for Biosignals
170
0
0.0
(
0
)
Ask ChatGPT about the research
No Arabic abstract
Datasets for biosignals, such as electroencephalogram (EEG) and electrocardiogram (ECG), often have noisy labels and have limited number of subjects (<100). To handle these challenges, we propose a self-supervised approach based on contrastive learning to model biosignals with a reduced reliance on labeled data and with fewer subjects. In this regime of limited labels and subjects, intersubject variability negatively impacts model performance. Thus, we introduce subject-aware learning through (1) a subject-specific contrastive loss, and (2) an adversarial training to promote subject-invariance during the self-supervised learning. We also develop a number of time-series data augmentation techniques to be used with the contrastive loss for biosignals. Our method is evaluated on publicly available datasets of two different biosignals with different tasks: EEG decoding and ECG anomaly detection. The embeddings learned using self-supervision yield competitive classification results compared to entirely supervised methods. We show that subject-invariance improves representation quality for these tasks, and observe that subject-specific loss increases performance when fine-tuning with supervised labels.
rate research
Read More
Leveraging domain knowledge including fingerprints and functional groups in molecular representation learning is crucial for chemical property prediction and drug discovery. When modeling the relation between graph structure and molecular properties implicitly, existing works can hardly capture structural or property changes and complex structure, with much smaller atom vocabulary and highly frequent atoms. In this paper, we propose the Contrastive Knowledge-aware GNN (CKGNN) for self-supervised molecular representation learning to fuse domain knowledge into molecular graph representation. We explicitly encode domain knowledge via knowledge-aware molecular encoder under the contrastive learning framework, ensuring that the generated molecular embeddings equipped with chemical domain knowledge to distinguish molecules with similar chemical formula but dissimilar functions. Extensive experiments on 8 public datasets demonstrate the effectiveness of our model with a 6% absolute improvement on average against strong competitors. Ablation study and further investigation also verify the best of both worlds: incorporation of chemical domain knowledge into self-supervised learning.
Contrastive learning (CL) is effective in learning data representations without label supervision, where the encoder needs to contrast each positive sample over multiple negative samples via a one-vs-many softmax cross-entropy loss. However, conventional CL is sensitive to how many negative samples are included and how they are selected. Proposed in this paper is a doubly CL strategy that contrasts positive samples and negative ones within themselves separately. We realize this strategy with contrastive attraction and contrastive repulsion (CACR) makes the query not only exert a greater force to attract more distant positive samples but also do so to repel closer negative samples. Theoretical analysis reveals the connection between CACR and CL from the perspectives of both positive attraction and negative repulsion and shows the benefits in both efficiency and robustness brought by separately contrasting within the sampled positive and negative pairs. Extensive large-scale experiments on standard vision tasks show that CACR not only consistently outperforms existing CL methods on benchmark datasets in representation learning, but also provides interpretable contrastive weights, demonstrating the efficacy of the proposed doubly contrastive strategy.
Assessment of mental workload in real world conditions is key to ensure the performance of workers executing tasks which demand sustained attention. Previous literature has employed electroencephalography (EEG) to this end. However, EEG correlates of mental workload vary across subjects and physical strain, thus making it difficult to devise models capable of simultaneously presenting reliable performance across users. The field of domain adaptation (DA) aims at developing methods that allow for generalization across different domains by learning domain-invariant representations. Such DA methods, however, rely on the so-called covariate shift assumption, which typically does not hold for EEG-based applications. As such, in this paper we propose a way to measure the statistical (marginal and conditional) shift observed on data obtained from different users and use this measure to quantitatively assess the effectiveness of different adaptation strategies. In particular, we use EEG data collected from individuals performing a mental task while running in a treadmill and explore the effects of different normalization strategies commonly used to mitigate cross-subject variability. We show the effects that different normalization schemes have on statistical shifts and their relationship with the accuracy of mental workload prediction as assessed on unseen participants at train time.
Recently, heterogeneous Graph Neural Networks (GNNs) have become a de facto model for analyzing HGs, while most of them rely on a relative large number of labeled data. In this work, we investigate Contrastive Learning (CL), a key component in self-supervised approaches, on HGs to alleviate the label scarcity problem. We first generate multiple semantic views according to metapaths and network schemas. Then, by pushing node embeddings corresponding to different semantic views close to each other (positives) and pulling other embeddings apart (negatives), one can obtain informative representations without human annotations. However, this CL approach ignores the relative hardness of negative samples, which may lead to suboptimal performance. Considering the complex graph structure and the smoothing nature of GNNs, we propose a structure-aware hard negative mining scheme that measures hardness by structural characteristics for HGs. By synthesizing more negative nodes, we give larger weights to harder negatives with limited computational overhead to further boost the performance. Empirical studies on three real-world datasets show the effectiveness of our proposed method. The proposed method consistently outperforms existing state-of-the-art methods and notably, even surpasses several supervised counterparts.
Contrastive learning applied to self-supervised representation learning has seen a resurgence in recent years, leading to state of the art performance in the unsupervised training of deep image models. Modern batch contrastive approaches subsume or significantly outperform traditional contrastive losses such as triplet, max-margin and the N-pairs loss. In this work, we extend the self-supervised batch contrastive approach to the fully-supervised setting, allowing us to effectively leverage label information. Clusters of points belonging to the same class are pulled together in embedding space, while simultaneously pushing apart clusters of samples from different classes. We analyze two possib
suggested questions
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
