Much of our understanding of complex structures is based on simplification: for example, metal-organic frameworks are often discussed in the context of nodes and linkers, allowing for a qualitative comparison with simpler inorganic structures. Here we show how such an understanding can be obtained in a systematic and quantitative framework, by combining atom-density based similarity (kernel) functions and unsupervised machine learning with the long-standing idea of coarse-graining atomic structure. We demonstrate how the latter enables a comparison of vastly different chemical systems, and use it to create a unified, two-dimensional structure map of experimentally known tetrahedral AB2 networks - including clathrate hydrates, zeolitic imidazolate frameworks (ZIFs), and diverse inorganic phases. The structural relationships that emerge can then be linked to microscopic properties of interest, which we exemplify for structural heterogeneity and tetrahedral density.
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