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Register a new userActive suspensions of bacteria and passive objects: a model for the near field pair dynamics
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Near field hydrodynamic interactions are essential to determine many important emergent behaviors observed in active suspensions, but have not been successfully modeled so far. In this work we propose an effective model capable of efficiently capturing the essence of the near field hydrodynamic interactions, validated numerically by a pedagogic model system consisting of an E. coli and a spherical tracer. The proposed model effectively captures all the details of near field hydrodynamics through only a tensorial coefficient of resistance, which is fundamentally different from, and thus cannot be replaced by, an effective interaction of conservative nature. In a critical test case that studies the scattering angle of the bacterium-tracer pair dynamics, calculations based on the proposed model reveals a region in parameter space where the bacterium is trapped by the spherical tracer, a phenomenon that is regularly observed in experiments but cannot be explained by any existing model.
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We describe and summarize a class of minimal numerical models emerged from recent development of simulation methods for dense particle suspensions in overdamped linear flows. The main ingredients include (i) a frame-invariant, short-range lubrication model for spherical particles, and (ii) a soft-core, stick/slide frictional contact model activated when particles overlap. We implement a version of the model using a modified velocity-Verlet algorithm that explicitly solves the $N$-body dynamical system in $mathcal{O}(cN)$ operations, where $c$ is a kernel constant depending on the cutoff of particle interactions. The implementation is validated against literature results on jamming transition and shear thickening suspensions from 40% to 64% volume fractions. Potential strategies to extend the present methodology to non-spherical particles are also suggested for very concentrated suspensions.
Control on microscopic scales depends critically on our ability to manipulate interactions with different physical fields. The creation of micro-machines therefore requires us to understand how multiple fields, such as surface capillary or electro-magnetic, can be used to produce predictable behaviour. Recently, a spinning micro-raft system was developed that exhibited both static and dynamic self-assembly [Wang et al. (2017) Sci. Adv. 3, e1602522]. These rafts employed both capillary and magnetic interactions and, at a critical driving frequency, would suddenly change from stable orbital patterns to static assembled structures. In this paper, we explain the dynamics of two interacting micro-rafts through a combination of theoretical models and experiments. This is first achieved by identifying the governing physics of the orbital patterns, the assembled structures, and the collapse separately. We find that the orbital patterns are determined by the short range capillary interactions between the disks, while the explanations of the other two behaviours only require the capillary far field. Finally we combine the three models to explain the dynamics of a new micro-raft experiment.
Under an applied traction, highly concentrated suspensions of solid particles in fluids can turn from a state in which they flow to a state in which they counteract the traction as an elastic solid: a shear-jammed state. Remarkably, the suspension can turn back to the flowing state simply by inverting the traction. A tensorial model is presented and tested in paradigmatic cases. We show that, to reproduce the phenomenology of shear jamming in generic geometries, it is necessary to link this effect to the elastic response supported by the suspension microstructure rather than to a divergence of the viscosity.
We investigate CO$_2$-driven diffusiophoresis of colloidal particles and bacterial cells in a Hele-Shaw geometry. Combining experiments and a model, we understand the characteristic length and time scales of CO$_2$-driven diffusiophoresis in relation to system dimensions and CO$_2$ diffusivity. Directional migration of wild-type V. cholerae and a mutant lacking flagella, as well as S. aureus and P. aeruginosa, near a dissolving CO$_2$ source shows that diffusiophoresis of bacteria is achieved independent of cell shape and Gram stain. Long-time experiments suggest possible applications for bacterial diffusiophoresis to cleaning systems or anti-biofouling surfaces.
We propose an explanation for the onset of oscillations seen in numerical simulations of dense, inclined flows of inelastic, frictional spheres. It is based on a phase transition between disordered and ordered collisional states that may be interrupted by the formation of force chains. Low frequency oscillations between ordered and disordered states take place over weakly bumpy bases; higher-frequency oscillations over strongly bumpy bases involve the formation of particle chains that extend to the base and interrupt the phase change. The predicted frequency and amplitude of the oscillations induced by the unstable part of the equation of state are similar to those seen in the simulations and they depend upon the contact stiffness in the same way. Such oscillations could be the source of sound produced by flowing sand.
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