One of the main dissipation processes acting on all scales in relativistic jets is thought to be governed by magnetic reconnection. Such dissipation processes have been studied in idealized environments, such as reconnection layers, which evolve in merging islands and lead to the production of plasmoids, ultimately resulting in efficient particle acceleration. In accretion flows onto black holes, reconnection layers can be developed and destroyed rapidly during the turbulent evolution of the flow. We present a series of two-dimensional general-relativistic magnetohydrodynamic simulations of tori accreting onto rotating black holes focusing our attention on the formation and evolution of current sheets. Initially, the tori are endowed with a poloidal magnetic field having a multi-loop structure along the radial direction and with an alternating polarity. During reconnection processes, plasmoids and plasmoid chains are developed leading to a flaring activity and hence to a variable electromagnetic luminosity. We describe the methods developed to track automatically the plasmoids that are generated and ejected during the simulation, contrasting the behaviour of multi-loop initial data with that encountered in typical simulations of accreting black holes having initial dipolar field composed of one loop only. Finally, we discuss the implications that our results have on the variability to be expected in accreting supermassive black holes.