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The Montage image mosaic engine has found wide applicability in astronomy research, integration into processing environments, and is an examplar application for the development of advanced cyber-infrastructure. It is written in C to provide performance and portability. Linking C/C++ libraries to the Python kernel at run time as binary extensions allows them to run under Python at compiled speeds and enables users to take advantage of all the functionality in Python. We have built Python binary extensions of the 59 ANSI-C modules that make up version 5 of the Montage toolkit. This has involved a turning the code into a C library, with driver code fully separated to reproduce the calling sequence of the command-line tools; and then adding Python and C linkage code with the Cython library, which acts as a bridge between general C libraries and the Python interface. We will demonstrate how to use these Python binary extensions to perform image processing, including reprojecting and resampling images, rectifying background emission to a common level, creation of image mosaics that preserve the calibration and astrometric fidelity of the input images, creating visualizations with an adaptive stretch algorithm, processing HEALPix images, and analyzing and managing image metadata.
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scikit-image is an image processing library that implements algorithms and utilities for use in research, education and industry applications. It is released under the liberal Modified BSD open source license, provides a well-documented API in the Python programming language, and is developed by an active, international team of collaborators. In this paper we highlight the advantages of open source to achieve the goals of the scikit-image library, and we showcase several real-world image processing applications that use scikit-image.
The scientific computing landscape has evolved dramatically in the past few years, with new schemes for organizing and storing data that reflect the growth in size and complexity of astronomical data sets. In response to this changing landscape, we are, over the next two years, deploying the next generation of the Montage toolkit ([ascl:1010.036]). The first release (October 2015) supports multi-dimensional data sets (data cubes), and insertion of XMP/AVM tags that allows images to drop-in to the WWT. The same release offers a beta-version of web-based interactive visualization of images; this includes wrappers for visualization in Python. Subsequent releases will support HEALPix (now standard in cosmic background experiments); incorporation of Montage into package managers (which enable automated management of software builds), and support for a library that will enable Montage to be called directly from Python. This next generation toolkit will inherit the architectural benefits of the current engine - component based tools, ANSI-C portability across Unix platforms and scalability for distributed processing. With the expanded functionality under development, Montage can be viewed not simply as a mosaic engine, but as a scalable, portable toolkit for managing, organizing and processing images.
Photometry of moving sources typically suffers from reduced signal-to-noise (SNR) or flux measurements biased to incorrect low values through the use of circular apertures. To address this issue we present the software package, TRIPPy: TRailed Image Photometry in Python. TRIPPy introduces the pill aperture, which is the natural extension of the circular aperture appropriate for linearly trailed sources. The pill shape is a rectangle with two semicircular end-caps, and is described by three parameters, the trail length and angle, and the radius. The TRIPPy software package also includes a new technique to generate accurate model point-spread functions (PSF) and trailed point-spread functions (TSF) from stationary background sources in sidereally tracked images. The TSF is merely the convolution of the model PSF, which consists of a moffat profile, and super sampled lookup table. From the TSF, accurate pill aperture corrections can be estimated as a function of pill radius with a accuracy of 10 millimags for highly trailed sources. Analogous to the use of small circular apertures and associated aperture corrections, small radius pill apertures can be used to preserve signal-to-noise of low flux sources, with appropriate aperture correction applied to provide an accurate, unbiased flux measurement at all SNR.
Images acquired with a telescope are blurred and corrupted by noise. The blurring is usually modeled by a convolution with the Point Spread Function and the noise by Additive Gaussian Noise. Recovering the observed image is an ill-posed inverse problem. Sparse deconvolution is well known to be an efficient deconvolution technique, leading to optimized pixel Mean Square Errors, but without any guarantee that the shapes of objects (e.g. galaxy images) contained in the data will be preserved. In this paper, we introduce a new shape constraint and exhibit its properties. By combining it with a standard sparse regularization in the wavelet domain, we introduce the Shape COnstraint REstoration algorithm (SCORE), which performs a standard sparse deconvolution, while preserving galaxy shapes. We show through numerical experiments that this new approach leads to a reduction of galaxy ellipticity measurement errors by at least 44%.
Radio astronomy observatories with high throughput back end instruments require real-time data processing. While computing hardware continues to advance rapidly, development of real-time processing pipelines remains difficult and time-consuming, which can limit scientific productivity. Motivated by this, we have developed Bifrost: an open-source software framework for rapid pipeline development. Bifrost combines a high-level Python interface with highly efficient reconfigurable data transport and a library of computing blocks for CPU and GPU processing. The framework is generalizable, but initially it emphasizes the needs of high-throughput radio astronomy pipelines, such as the ability to process data buffers as if they were continuous streams, the capacity to partition processing into distinct data sequences (e.g., separate observations), and the ability to extract specific intervals from buffered data. Computing blocks in the library are designed for applications such as interferometry, pulsar dedispersion and timing, and transient search pipelines. We describe the design and implementation of the Bifrost framework and demonstrate its use as the backbone in the correlation and beamforming back end of the Long Wavelength Array station in the Sevilleta National Wildlife Refuge, NM.
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