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Multivariate time series with missing values are common in areas such as healthcare and finance, and have grown in number and complexity over the years. This raises the question whether deep learning methodologies can outperform classical data imputation methods in this domain. However, naive applications of deep learning fall short in giving reliable confidence estimates and lack interpretability. We propose a new deep sequential latent variable model for dimensionality reduction and data imputation. Our modeling assumption is simple and interpretable: the high dimensional time series has a lower-dimensional representation which evolves smoothly in time according to a Gaussian process. The non-linear dimensionality reduction in the presence of missing data is achieved using a VAE approach with a novel structured variational approximation. We demonstrate that our approach outperforms several classical and deep learning-based data imputation methods on high-dimensional data from the domains of computer vision and healthcare, while additionally improving the smoothness of the imputations and providing interpretable uncertainty estimates.
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Existing methods for structure discovery in time series data construct interpretable, compositional kernels for Gaussian process regression models. While the learned Gaussian process model provides posterior mean and variance estimates, typically the structure is learned via a greedy optimization procedure. This restricts the space of possible solutions and leads to over-confident uncertainty estimates. We introduce a fully Bayesian approach, inferring a full posterior over structures, which more reliably captures the uncertainty of the model.
The imputation of missing values in time series has many applications in healthcare and finance. While autoregressive models are natural candidates for time series imputation, score-based diffusion models have recently outperformed existing counterparts including autoregressive models in many tasks such as image generation and audio synthesis, and would be promising for time series imputation. In this paper, we propose Conditional Score-based Diffusion models for Imputation (CSDI), a novel time series imputation method that utilizes score-based diffusion models conditioned on observed data. Unlike existing score-based approaches, the conditional diffusion model is explicitly trained for imputation and can exploit correlations between observed values. On healthcare and environmental data, CSDI improves by 40-70% over existing probabilistic imputation methods on popular performance metrics. In addition, deterministic imputation by CSDI reduces the error by 5-20% compared to the state-of-the-art deterministic imputation methods. Furthermore, CSDI can also be applied to time series interpolation and probabilistic forecasting, and is competitive with existing baselines.
This paper addresses the problem of time series forecasting for non-stationary signals and multiple future steps prediction. To handle this challenging task, we introduce DILATE (DIstortion Loss including shApe and TimE), a new objective function for training deep neural networks. DILATE aims at accurately predicting sudden changes, and explicitly incorporates two terms supporting precise shape and temporal change detection. We introduce a differentiable loss function suitable for training deep neural nets, and provide a custom back-prop implementation for speeding up optimization. We also introduce a variant of DILATE, which provides a smooth generalization of temporally-constrained Dynamic Time Warping (DTW). Experiments carried out on various non-stationary datasets reveal the very good behaviour of DILATE compared to models trained with the standard Mean Squared Error (MSE) loss function, and also to DTW and variants. DILATE is also agnostic to the choice of the model, and we highlight its benefit for training fully connected networks as well as specialized recurrent architectures, showing its capacity to improve over state-of-the-art trajectory forecasting approaches.
Multivariate time series are routinely encountered in real-world applications, and in many cases, these time series are strongly correlated. In this paper, we present a deep learning structural time series model which can (i) handle correlated multivariate time series input, and (ii) forecast the targeted temporal sequence by explicitly learning/extracting the trend, seasonality, and event components. The trend is learned via a 1D and 2D temporal CNN and LSTM hierarchical neural net. The CNN-LSTM architecture can (i) seamlessly leverage the dependency among multiple correlated time series in a natural way, (ii) extract the weighted differencing feature for better trend learning, and (iii) memorize the long-term sequential pattern. The seasonality component is approximated via a non-liner function of a set of Fourier terms, and the event components are learned by a simple linear function of regressor encoding the event dates. We compare our model with several state-of-the-art methods through a comprehensive set of experiments on a variety of time series data sets, such as forecasts of Amazon AWS Simple Storage Service (S3) and Elastic Compute Cloud (EC2) billings, and the closing prices for corporate stocks in the same category.
Sufficient high-quality traffic data are a crucial component of various Intelligent Transportation System (ITS) applications and research related to congestion prediction, speed prediction, incident detection, and other traffic operation tasks. Nonetheless, missing traffic data are a common issue in sensor data which is inevitable due to several reasons, such as malfunctioning, poor maintenance or calibration, and intermittent communications. Such missing data issues often make data analysis and decision-making complicated and challenging. In this study, we have developed a generative adversarial network (GAN) based traffic sensor data imputation framework (TSDIGAN) to efficiently reconstruct the missing data by generating realistic synthetic data. In recent years, GANs have shown impressive success in image data generation. However, generating traffic data by taking advantage of GAN based modeling is a challenging task, since traffic data have strong time dependency. To address this problem, we propose a novel time-dependent encoding method called the Gramian Angular Summation Field (GASF) that converts the problem of traffic time-series data generation into that of image generation. We have evaluated and tested our proposed model using the benchmark dataset provided by Caltrans Performance Management Systems (PeMS). This study shows that the proposed model can significantly improve the traffic data imputation accuracy in terms of Mean Absolute Error (MAE) and Root Mean Squared Error (RMSE) compared to state-of-the-art models on the benchmark dataset. Further, the model achieves reasonably high accuracy in imputation tasks even under a very high missing data rate ($>$ 50%), which shows the robustness and efficiency of the proposed model.
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