The brightest magnetic chemically peculiar stars theta Aur and eps UMa were targeted by numerous studies of their photometric and spectroscopic variability. Detailed maps of chemical abundance spots were repeatedly derived for both stars. However, very little information on the magnetic field geometries of these stars is available. In this study we aim to determine detailed magnetic field topologies of theta Aur and eps UMa based on modern, high-resolution spectropolarimetric observations. Both targets were observed in all four Stokes parameters using the Narval and ESPaDOnS spectropolarimeters. A multi-line technique of least-squares deconvolution was employed to detect polarisation signatures in spectral lines. These signatures were modelled with a Zeeman-Doppler imaging code. We succeeded in detecting variable circular and linear polarisation signatures for theta Aur. Only circular polarisation was detected for eps UMa. We obtained new sets of high-precision longitudinal magnetic field measurements using mean circular polarisation metal line profiles as well as hydrogen line cores, which are consistent with historical data. Magnetic