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Register a new userA 3-dimensional model of flagellar swimming in a Brinkman fluid
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We investigate 3-dimensional flagellar swimming in a fluid with a sparse network of stationary obstacles or fibers. The Brinkman equation is used to model the average fluid flow where a flow-dependent term, including a resistance parameter that is inversely proportional to the permeability, models the resistive effects of the fibers on the fluid. To solve for the local linear and angular velocities that are coupled to the flagellar motion, we extend the method of regularized Brinkmanlets to incorporate a Kirchhoff rod, discretized as point forces and torques along a centerline. Representing a flagellum as a Kirchhoff rod, we investigate emergent waveforms for different preferred strain and twist functions. Since the Kirchhoff rod formulation allows for out-of-plane motion, in addition to studying a preferred planar sine wave configuration, we also study the case with a preferred helical configuration. Our numerical method is validated by comparing results to asymptotic swimming speeds derived for an infinite-length cylinder propagating planar or helical waves. Similar to the asymptotic analysis for both planar and helical bending, we observe that with small amplitude bending, swimming speed is always enhanced relative to the case with no fibers in the fluid (Stokes) as the resistance parameter is increased....
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We develop a one-dimensional model for the unsteady fluid--structure interaction (FSI) between a soft-walled microchannel and viscous fluid flow within it. A beam equation, which accounts for both transverse bending rigidity and nonlinear axial tension, is coupled to a one-dimensional fluid model obtained from depth-averaging the two-dimensional incompressible Navier--Stokes equations across the channel height. Specifically, the Navier--Stokes equations are scaled in the viscous lubrication limit relevant to microfluidics. The resulting set of coupled nonlinear partial differential equations is solved numerically through a segregated approach employing fully-implicit time stepping. We explore both the static and dynamic FSI behavior of this example microchannel system by varying a reduced Reynolds number $Re$, which necessarily changes the Strouhal number $St$, while we keep the geometry and a modified dimensionless Youngs modulus $Sigma$ fixed. At steady state, an order-of-magnitude analysis (balancing argument) shows that the axially-averaged pressure in the flow, $langle Prangle$, exhibits two different scaling regimes, while the maximum deformation of the top wall of the channel, $H_{mathrm{max}}$, can fall into four different regimes, depending on the magnitudes of $Re$ and $Sigma$. These regimes are physically explained as resulting from the competition between the inertial and viscous forces in the fluid flow as well as the bending resistance and tension in the elastic wall. Finally, the linear stability of the steady inflated microchannel shape is assessed via a modal analysis, showing the existence of many highly oscillatory but stable modes, which further highlights the computational challenge of simulating unsteady FSIs.
We study the deformation and motion of an erythrocyte in fluid flows via a lattice Boltzmann method. To this purpose, the bending rigidity and the elastic modulus of isotropic dilation are introduced and incorporated with the lattice Boltzmann simulation, and the membrane-flow interactions on both sides of the membrane are carefully examined. We find that the static biconcave shape of an erythrocyte is quite stable and can effectively resist the pathological changes on their membrane. Further, our simulation results show that in shear flow, the erythrocyte will be highly flattened and undergo tank tread-like motion. This phenomenon has been observed by experiment very long time ago, but it has feazed the boundary integral and singularity methods up to the present. Because of its intrinsically parallel dynamics, this lattice Boltzmann method is expected to find wide applications for both single and multi-vesicles suspension as well as complex open membranes in various fluid flows for a wide range of Reynolds numbers.
The flexibility of the bacterial flagellar hook is believed to have substantial consequences for microorganism locomotion. Using a simplified model of a rigid flagellum and a flexible hook, we show that the paths of axisymmetric cell bodies driven by a single flagellum in Stokes flow are generically helical. Phase-averaged resistance and mobility tensors are produced to describe the flagellar hydrodynamics, and a helical rod model which retains a coupling between translation and rotation is identified as a distinguished asymptotic limit. A supercritical Hopf bifurcation in the flagellar orientation beyond a critical ratio of flagellar motor torque to hook bending stiffness, which is set by the spontaneous curvature of the flexible hook, the shape of the cell body, and the flagellum geometry, can have a dramatic effect on the cells trajectory through the fluid. Although the equilibrium hook angle can result in a wide variance in the trajectorys helical pitch, we find a very consistent prediction for the trajectorys helical amplitude using parameters relevant to swimming P. aeruginosa cells.
The Brinkman equation has found great popularity in modelling the interfacial flow between free fluid and a porous medium. However, it is still unclear how to determine an appropriate effective Brinkman viscosity without resolving the flow at the pore scale. Here, we propose to determine the Brinkman viscosity for rough porous media from the interface slip length and the interior permeability. Both slip and permeability can be determined from unit-cell analysis, thus enabling an a priori estimate of the effective viscosity. By comparing the velocity distribution in the porous material predicted from the Brinkman equation with that obtained from pore-scale resolved simulations, we show that modelling errors are $sim 10%$ and not larger than $40%$. We highlight the physical origins of the obtained errors and demonstrate that the Brinkman model can be much more accurate for irregular porous structures.
Motivated by the complex rheological behaviors observed in small/micro scale blood vessels, such as the Fahraeus effect, plasma-skimming, shear-thinning, etc., we develop a non-linear suspension model for blood. The viscosity is assumed to depend on the volume fraction (hematocrit) and the shear rate. The migration of the red blood cells (RBCs) is studied using a concentration flux equation. A parametric study with two representative problems, namely simple shear flow and a pressure driven flow demonstrate the ability of this reduced-order model to reproduce several key features of the two-fluid model (mixture theory approach), with much lower computational cost.
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