No Arabic abstract
Digital holography enables us to reconstruct objects in three-dimensional space from holograms captured by an imaging device. For the reconstruction, we need to know the depth position of the recoded object in advance. In this study, we propose depth prediction using convolutional neural network (CNN)-based regression. In the previous researches, the depth of an object was estimated through reconstructed images at different depth positions from a hologram using a certain metric that indicates the most focused depth position; however, such a depth search is time-consuming. The CNN of the proposed method can directly predict the depth position with millimeter precision from holograms.
Automated methods for breast cancer detection have focused on 2D mammography and have largely ignored 3D digital breast tomosynthesis (DBT), which is frequently used in clinical practice. The two key challenges in developing automated methods for DBT classification are handling the variable number of slices and retaining slice-to-slice changes. We propose a novel deep 2D convolutional neural network (CNN) architecture for DBT classification that simultaneously overcomes both challenges. Our approach operates on the full volume, regardless of the number of slices, and allows the use of pre-trained 2D CNNs for feature extraction, which is important given the limited amount of annotated training data. In an extensive evaluation on a real-world clinical dataset, our approach achieves 0.854 auROC, which is 28.80% higher than approaches based on 3D CNNs. We also find that these improvements are stable across a range of model configurations.
We propose a convolutional neural network (CNN) architecture for image classification based on subband decomposition of the image using wavelets. The proposed architecture decomposes the input image spectra into multiple critically sampled subbands, extracts features using a single CNN per subband, and finally, performs classification by combining the extracted features using a fully connected layer. Processing each of the subbands by an individual CNN, thereby limiting the learning scope of each CNN to a single subband, imposes a form of structural regularization. This provides better generalization capability as seen by the presented results. The proposed architecture achieves best-in-class performance in terms of total multiply-add-accumulator operations and nearly best-in-class performance in terms of total parameters required, yet it maintains competitive classification performance. We also show the proposed architecture is more robust than the regular full-band CNN to noise caused by weight-and-bias quantization and input quantization.
This paper describes a set of neural network architectures, called Prediction Neural Networks Set (PNNS), based on both fully-connected and convolutional neural networks, for intra image prediction. The choice of neural network for predicting a given image block depends on the block size, hence does not need to be signalled to the decoder. It is shown that, while fully-connected neural networks give good performance for small block sizes, convolutional neural networks provide better predictions in large blocks with complex textures. Thanks to the use of masks of random sizes during training, the neural networks of PNNS well adapt to the available context that may vary, depending on the position of the image block to be predicted. When integrating PNNS into a H.265 codec, PSNR-rate performance gains going from 1.46% to 5.20% are obtained. These gains are on average 0.99% larger than those of prior neural network based methods. Unlike the H.265 intra prediction modes, which are each specialized in predicting a specific texture, the proposed PNNS can model a large set of complex textures.
Fetal cortical plate segmentation is essential in quantitative analysis of fetal brain maturation and cortical folding. Manual segmentation of the cortical plate, or manual refinement of automatic segmentations is tedious and time-consuming. Automatic segmentation of the cortical plate, on the other hand, is challenged by the relatively low resolution of the reconstructed fetal brain MRI scans compared to the thin structure of the cortical plate, partial voluming, and the wide range of variations in the morphology of the cortical plate as the brain matures during gestation. To reduce the burden of manual refinement of segmentations, we have developed a new and powerful deep learning segmentation method. Our method exploits new deep attentive modules with mixed kernel convolutions within a fully convolutional neural network architecture that utilizes deep supervision and residual connections. We evaluated our method quantitatively based on several performance measures and expert evaluations. Results show that our method outperforms several state-of-the-art deep models for segmentation, as well as a state-of-the-art multi-atlas segmentation technique. We achieved average Dice similarity coefficient of 0.87, average Hausdorff distance of 0.96 mm, and average symmetric surface difference of 0.28 mm on reconstructed fetal brain MRI scans of fetuses scanned in the gestational age range of 16 to 39 weeks. With a computation time of less than 1 minute per fetal brain, our method can facilitate and accelerate large-scale studies on normal and altered fetal brain cortical maturation and folding.
Deep learning models have had a great success in disease classifications using large data pools of skin cancer images or lung X-rays. However, data scarcity has been the roadblock of applying deep learning models directly on prostate multiparametric MRI (mpMRI). Although model interpretation has been heavily studied for natural images for the past few years, there has been a lack of interpretation of deep learning models trained on medical images. This work designs a customized workflow for the small and imbalanced data set of prostate mpMRI where features were extracted from a deep learning model and then analyzed by a traditional machine learning classifier. In addition, this work contributes to revealing how deep learning models interpret mpMRI for prostate cancer patients stratification.