In this work we present a new generic feature of PT-symmetric Bose-Einstein condensates by studying the many-particle description of a two-mode condensate with balanced gain and loss. This is achieved using a master equation in Lindblad form whose mean-field limit is a PT-symmetric Gross-Pitaevskii equation. It is shown that the purity of the condensate periodically drops to small values but then is nearly completely restored. This has a direct impact on the average contrast in interference experiments which cannot be covered by the mean-field approximation, in which a completely pure condensate is assumed.