We calculate the effect of a heat current on transporting $^3$He dissolved in superfluid $^4$He at ultralow concentration, as will be utilized in a proposed experimental search for the electric dipole moment of the neutron (nEDM). In this experiment, a phonon wind will generated to drive (partly depolarized) $^3$He down a long pipe. In the regime of $^3$He concentrations $tilde < 10^{-9}$ and temperatures $sim 0.5$ K, the phonons comprising the heat current are kept in a flowing local equilibrium by small angle phonon-phonon scattering, while they transfer momentum to the walls via the $^4$He first viscosity. On the other hand, the phonon wind drives the $^3$He out of local equilibrium via phonon-$^3$He scattering. For temperatures below $0.5$ K, both the phonon and $^3$He mean free paths can reach the centimeter scale, and we calculate the effects on the transport coefficients. We derive the relevant transport coefficients, the phonon thermal conductivity and the $^3$He diffusion constants from the Boltzmann equation. We calculate the effect of scattering from the walls of the pipe and show that it may be characterized by the average distance from points inside the pipe to the walls. The temporal evolution of the spatial distribution of the $^3$He atoms is determined by the time dependent $^3$He diffusion equation, which describes the competition between advection by the phonon wind and $^3$He diffusion. As a consequence of the thermal diffusivity being small compared with the $^3$He diffusivity, the scale height of the final $^3$He distribution is much smaller than that of the temperature gradient. We present exact solutions of the time dependent temperature and $^3$He distributions in terms of a complete set of normal modes.
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