NGC2264 is a young cluster with a rich circumstellar disk population which makes it an ideal target for studying the evolution of stellar clusters. Our goal is to study its star formation history and to analyse the primordial disk evolution of its members. The study presented is based on data obtained with Spitzer IRAC and MIPS, combined with deep NIR ground-based FLAMINGOS imaging and previously published optical data. We build NIR dust extinction maps of the molecular cloud associated with the cluster, and determine it to have a mass of 2.1x10^3Msun above an Av of 7mag. Using a differential K_s-band luminosity function of the cluster, we estimate the size of its population to be 1436$pm$242 members. The star formation efficiency is ~25%. We identify the disk population: (i) optically thick inner disks, (ii) anaemic inner disks, and (iii) disks with inner holes, or transition disks. We analyse the spatial distribution of these sources and find that sources with thick disks segregate into sub-clusterings, whereas sources with anaemic disks do not. Furthermore, sources with anaemic disks are found to be unembedded (Av<3mag), whereas the clustered sources with thick disks are still embedded within the parental cloud. NGC2264 has undergone more than one star-forming event, where the anaemic and extincted thick disk population appear to have formed in separate episodes. We also find tentative evidence of triggered star-formation in the Fox Fur Nebula. In terms of disk evolution, our findings support the emerging disk evolution paradigm of two distinct evolutionary paths for primordial optically thick disks: a homologous one where the disk emission decreases uniformly at NIR and MIR wavelengths, and a radially differential one where the emission from the inner region of the disk decreases more rapidly than from the outer region (forming transition disks).
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