Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userIR Spectrum of the O-H$...$O Hydrogen Bond of Phthalic Acid Monomethylester in Gas Phase and in CCl$_4$ Solution
264
0
0.0
(
0
)
Ask ChatGPT about the research
No Arabic abstract
The absorption spectrum of the title compound in the spectral range of the Hydrogen-bonded OH-stretching vibration has been investigated using a five-dimensional gas phase model as well as a QM/MM classical molecular dynamics simulation in solution. The gas phase model predicts a Fermi-resonance between the OH-stretching fundamental and the first OH-bending overtone transition with considerable oscillator strength redistribution. The anharmonic coupling to a low-frequency vibration of the Hydrogen bond leading to a vibrational progression is studied within a diabatic potential energy curve model. The condensed phase simulation of the dipole-dipole correlation function results in a broad band in the 3000 cm region in good agreement with experimental data. Further, weaker absorption features around 2600 cm have been identified as being due to motion of the Hydrogen within the Hydrogen bond.
rate research
Read More
An accurate ab initio theory of the H-bond structure of liquid water requires a high-level exchange correlation approximation from density functional theory. Based on the liquid structures modeled by ab initio molecular dynamics by using maximally localized Wannier functions as a basis, we study the infrared spectrum of water within the canonical ensemble. In particular, we employ both the Perdew-Burke-Ernzerhof (PBE) functional within the generalized gradient approximation (GGA) and the state-of-the-art meta-GGA level approximation provided by the strongly constrained and appropriately normed (SCAN) functional. We demonstrate that the SCAN functional improves not only the water structure but also the theoretical infrared spectrum of water. Our analyses show that the improvement in the stretching and bending bands can be mainly attributed to better descriptions of directional H bonding and the covalency at the inter- and intramolecular levels, respectively. On the other hand, better agreements in libration and hindered translation bands are due to the improved dynamics of the H-bond network enabled by a less structured liquid in the experimental direction. The spectrum predicted by SCAN shows much better agreement with experimental data than the conventionally widely adopted PBE functional at the GGA level.
We study the formation of C$_{18}$H and C$_{18}$H$_2$ by irradiating a cyclo[$18$]carbon molecule with atomic and molecular hydrogen at impact energy, $E$, in the range of 0.5-25 eV. We utilize the density-functional tight-binding method to perform molecular dynamics simulations to emulate the interaction of a carbon ring when colliding with atomic or molecular hydrogen. From our results, the formation of the C$_{18}$H molecules is likely to occur upon irradiating by H atoms at $E < 10$ eV and by H$_2$ molecules at $2 < E < 15$ eV center of mass energy. Formation of C$_{18}$H$_2$ molecules is only observed at around $E = 2$ eV. Our results show that the absorption of hydrogen is more prone in atomic than in molecular hydrogen atmosphere. Thus, we find that the probability of physio-absorption reaches up to 80 % for atomic projectiles with $E < 5$ eV but only up to 10 % for the molecular ones. Our analysis shows that the deformation of the carbon ring due to the hydrogen bonding produces transition from $sp$ to $sp^2$ hybridization. The angle between the carbon atoms at the locations near to the H bond in the resulting ring is not 120$^o$ but instead 110$^o$ degrees. No molecular fragmentation of the C$_{18}$ ring is observed.
We calculated reaction rate constants including atom tunneling of the reaction of dihydrogen with the hydroxy radical down to a temperature of 50 K. Instanton theory and canonical variational theory with microcanonical optimized multidimensional tunneling (CVT/$mu$OMT) were applied using a fitted potential energy surface [J. Chem. Phys. 138, 154301 (2013)]. All possible protium/deuterium isotopologues were considered. Atom tunneling increases at about 250 K (200 K for deuterium transfer). Even at 50 K the rate constants of all isotopologues remain in the interval $ 4 cdot 10^{-20}$ to $4 cdot 10^{-17}$ cm$^3$ s$^{-1}$ , demonstrating that even deuterat
Oxides containing iridium ions display a range of magnetic and conducting properties that depend on the delicate balance between interactions and are controlled, at least in part, by the details of the crystal architecture. We have used muon-spin rotation ($mu$SR) to study the local field in four iridium oxides, Ca$_4$IrO$_6$, Ca$_5$Ir$_3$O$_{12}$, Sr$_3$Ir$_2$O$_7$ and Sr$_2$IrO$_4$, which show contrasting behavior. Our $mu$SR data on Ca$_4$IrO$_6$ and Ca$_5$Ir$_3$O$_{12}$ are consistent with conventional antiferromagnetism where quasistatic magnetic order develops below $T_{rm N}=13.85(6)$ K and 7.84(7) K respectively. A lower internal field is observed for Ca$_5$Ir$_3$O$_{12}$, as compared to Ca$_4$IrO$_6$ reflecting the presence of both Ir$^{4+}$ and Ir$^{5+}$ ions, resulting in a more magnetically dilute structure. Muon precession is only observed over a restricted range of temperature in Sr$_3$Ir$_2$O$_7$, while the Mott insulator Sr$_2$IrO$_4$ displays more complex behavior, with the $mu$SR signal containing a single, well-resolved precession signal below $T_{rm N}=230$,K, which splits into two precession signals at low temperature following a reorientation of the spins in the ordered state.
We present a generally-applicable computational framework for the efficient and accurate characterization of molecular structural patterns and acid properties in explicit solvent using H$_2$O$_2$ and CH$_3$SO$_3$H in phenol as an example. In order to address the challenges posed by the complexity of the problem, we resort to a set of data-driven methods and enhanced sampling algorithms. The synergistic application of these techniques makes the first-principle estimation of the chemical properties feasible without renouncing to the use of explicit solvation, involving extensive statistical sampling. Ensembles of neural network potentials are trained on a set of configurations carefully selected out of preliminary simulations performed at a low-cost density-functional tight-binding (DFTB) level. The energy and forces of these configurations are then recomputed at the hybrid density functional theory (DFT) level and used to train the neural networks. The stability of the NN model is enhanced by using DFTB energetics as a baseline, but the efficiency of the direct NN (i.e., baseline-free) is exploited via a multiple-time step integrator. The neural network potentials are combined with enhanced sampling techniques, such as replica exchange and metadynamics, and used to characterize the relevant protonated species and dominant non-covalent interactions in the mixture, also considering nuclear quantum effects.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
