We analyze the evolution of cosmological perturbations in the cyclic model, paying particular attention to their behavior and interplay over multiple cycles. Our key results are: (1) galaxies and large scale structure present in one cycle are generated by the quantum fluctuations in the preceding cycle without interference from perturbations or structure generated in earlier cycles and without interfering with structure generated in later cycles; (2) the ekpyrotic phase, an epoch of gentle contraction with equation of state $wgg 1$ preceding the hot big bang, makes the universe homogeneous, isotropic and flat within any given observers horizon; and, (3) although the universe is uniform within each observers horizon, the global structure of the cyclic universe is more complex, owing to the effects of superhorizon length perturbations, and cannot be described in a uniform Friedmann-Robertson-Walker picture. In particular, we show that the ekpyrotic phase is so effective in smoothing, flattening and isotropizing the universe within the horizon that this phase alone suffices to solve the horizon and flatness problems even without an extended period of dark energy domination (a kind of low energy inflation). Instead, the cyclic model rests on a genuinely novel, non-inflationary mechanism (ekpyrotic contraction) for resolving the classic cosmological conundrums.
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