We use a new weak basis invariant approach to classify all the observable phases in any extension of the Standard Model (SM). We apply this formalism to determine the invariant CP phases in a simplified version of the Minimal Supersymmetric SM with only three non-trivial flavour structures. We propose four experimental measures to fix completely all the observable phases in the model. After these phases have been determined from experiment, we are able to make predictions on any other CP-violating observable in the theory, much in the same way as in the Standard Model all CP-violation observables are proportional to the Jarlskog invariant.