Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userA Sequential Algorithm for Generating Random Graphs
88
0
0.0
(
0
)
Added by
Mohsen Bayati
Publication date
2007
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
We present a nearly-linear time algorithm for counting and randomly generating simple graphs with a given degree sequence in a certain range. For degree sequence $(d_i)_{i=1}^n$ with maximum degree $d_{max}=O(m^{1/4-tau})$, our algorithm generates almost uniform random graphs with that degree sequence in time $O(m,d_{max})$ where $m=f{1}{2}sum_id_i$ is the number of edges in the graph and $tau$ is any positive constant. The fastest known algorithm for uniform generation of these graphs McKay Wormald (1990) has a running time of $O(m^2d_{max}^2)$. Our method also gives an independent proof of McKays estimate McKay (1985) for the number of such graphs. We also use sequential importance sampling to derive fully Polynomial-time Randomized Approximation Schemes (FPRAS) for counting and uniformly generating random graphs for the same range of $d_{max}=O(m^{1/4-tau})$. Moreover, we show that for $d = O(n^{1/2-tau})$, our algorithm can generate an asymptotically uniform $d$-regular graph. Our results improve the previous bound of $d = O(n^{1/3-tau})$ due to Kim and Vu (2004) for regular graphs.
rate research
Read More
Best match graphs (BMGs) are vertex-colored directed graphs that were introduced to model the relationships of genes (vertices) from different species (colors) given an underlying evolutionary tree that is assumed to be unknown. In real-life applications, BMGs are estimated from sequence similarity data. Measurement noise and approximation errors usually result in empirically determined graphs that in general violate characteristic properties of BMGs. The arc modification problems for BMGs aim at correcting such violations and thus provide a means to improve the initial estimates of best match data. We show here that the arc deletion, arc completion and arc editing problems for BMGs are NP-complete and that they can be formulated and solved as integer linear programs. To this end, we provide a novel characterization of BMGs in terms of triples (binary trees on three leaves) and a characterization of BMGs with two colors in terms of forbidden subgraphs.
Common models for random graphs, such as ErdH{o}s-R{e}nyi and Kronecker graphs, correspond to generating random adjacency matrices where each entry is non-zero based on a large matrix of probabilities. Generating an instance of a random graph based on these models is easy, although inefficient, by flipping biased coins (i.e. sampling binomial random variables) for each possible edge. This process is inefficient because most large graph models correspond to sparse graphs where the vast majority of coin flips will result in no edges. We describe some not-entirely-well-known, but not-entirely-unknown, techniques that will enable us to sample a graph by finding only the coin flips that will produce edges. Our analogies for these procedures are ball-dropping, which is easier to implement, but may need extra work due to duplicate edges, and grass-hopping, which results in no duplicated work or extra edges. Grass-hopping does this using geometric random variables. In order to use this idea on complex probability matrices such as those in Kronecker graphs, we decompose the problem into three steps, each of which are independently useful computational primitives: (i) enumerating non-decreasing sequences, (ii) unranking multiset permutations, and (iii) decoding and encoding z-curve and Morton codes and permutations. The third step is the result of a new connection between repeated Kronecker product operations and Morton codes. Throughout, we draw connections to ideas underlying applied math and computer science including coupon collector problems.
The isomorphism problem is known to be efficiently solvable for interval graphs, while for the larger class of circular-arc graphs its complexity status stays open. We consider the intermediate class of intersection graphs for families of circular arcs that satisfy the Helly property. We solve the isomorphism problem for this class in logarithmic space. If an input graph has a Helly circular-arc model, our algorithm constructs it canonically, which means that the models constructed for isomorphic graphs are equal.
The first-fit coloring is a heuristic that assigns to each vertex, arriving in a specified order $sigma$, the smallest available color. The problem Grundy Coloring asks how many colors are needed for the most adversarial vertex ordering $sigma$, i.e., the maximum number of colors that the first-fit coloring requires over all possible vertex orderings. Since its inception by Grundy in 1939, Grundy Coloring has been examined for its structural and algorithmic aspects. A brute-force $f(k)n^{2^{k-1}}$-time algorithm for Grundy Coloring on general graphs is not difficult to obtain, where $k$ is the number of colors required by the most adversarial vertex ordering. It was asked several times whether the dependency on $k$ in the exponent of $n$ can be avoided or reduced, and its answer seemed elusive until now. We prove that Grundy Coloring is W[1]-hard and the brute-force algorithm is essentially optimal under the Exponential Time Hypothesis, thus settling this question by the negative. The key ingredient in our W[1]-hardness proof is to use so-called half-graphs as a building block to transmit a color from one vertex to another. Leveraging the half-graphs, we also prove that b-Chromatic Core is W[1]-hard, whose parameterized complexity was posed as an open question by Panolan et al. [JCSS 17]. A natural follow-up question is, how the parameterized complexity changes in the absence of (large) half-graphs. We establish fixed-parameter tractability on $K_{t,t}$-free graphs for b-Chromatic Core and Partial Grundy Coloring, making a step toward answering this question. The key combinatorial lemma underlying the tractability result might be of independent interest.
We consider bootstrap percolation and diffusion in sparse random graphs with fixed degrees, constructed by configuration model. Every node has two states: it is either active or inactive. We assume that to each node is assigned a nonnegative (integer) threshold. The diffusion process is initiated by a subset of nodes with threshold zero which consists of initially activated nodes, whereas every other node is inactive. Subsequently, in each round, if an inactive node with threshold $theta$ has at least $theta$ of its neighbours activated, then it also becomes active and remains so forever. This is repeated until no more nodes become activated. The main result of this paper provides a central limit theorem for the final size of activated nodes. Namely, under suitable assumptions on the degree and threshold distributions, we show that the final size of activated nodes has asymptotically Gaussian fluctuations.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
