We report on an anomalous behavior of the spin-splitting zeros in the de Haas-van Alphen (dHvA) signal of a quasi-two-dimensional organic superconductor. The zeros as well as the angular dependence of the amplitude of the second harmonic deviate remarkably from the standard Lifshitz-Kosevich (LK) prediction. In contrast, the angular dependence of the fundamental dHvA amplitude as well as the spin-splitting zeros of the Shubnikov-de Haas signal follow the LK theory. We can explain this behavior by small chemical-potential oscillations and find a very good agreement between theory and experiment. A detailed wave-shape analysis of the dHvA signal corroborates the existence of an oscillating chemical potential.