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Register a new userOpen Relation Modeling: Learning to Define Relations between Entities
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Jie Huang
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Relations between entities can be represented by different instances, e.g., a sentence containing both entities or a fact in a Knowledge Graph (KG). However, these instances may not well capture the general relations between entities, may be difficult to understand by humans, even may not be found due to the incompleteness of the knowledge source. In this paper, we introduce the Open Relation Modeling task - given two entities, generate a coherent sentence describing the relation between them. To solve this task, we propose to teach machines to generate definition-like relation descriptions by letting them learn from definitions of entities. Specifically, we fine-tune Pre-trained Language Models (PLMs) to produce definitions conditioned on extracted entity pairs. To help PLMs reason between entities and provide additional relational knowledge to PLMs for open relation modeling, we incorporate reasoning paths in KGs and include a reasoning path selection mechanism. We show that PLMs can select interpretable and informative reasoning paths by confidence estimation, and the selected path can guide PLMs to generate better relation descriptions. Experimental results show that our model can generate concise but informative relation descriptions that capture the representative characteristics of entities and relations.
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Recently we proposed the Span Attribute Tagging (SAT) Model (Du et al., 2019) to infer clinical entities (e.g., symptoms) and their properties (e.g., duration). It tackles the challenge of large label space and limited training data using a hierarchical two-stage approach that identifies the span of interest in a tagging step and assigns labels to the span in a classification step. We extend the SAT model to jointly infer not only entities and their properties but also relations between them. Most relation extraction models restrict inferring relations between tokens within a few neighboring sentences, mainly to avoid high computational complexity. In contrast, our proposed Relation-SAT (R-SAT) model is computationally efficient and can infer relations over the entire conversation, spanning an average duration of 10 minutes. We evaluate our model on a corpus of clinical conversations. When the entities are given, the R-SAT outperforms baselines in identifying relations between symptoms and their properties by about 32% (0.82 vs 0.62 F-score) and by about 50% (0.60 vs 0.41 F-score) on medications and their properties. On the more difficult task of jointly inferring entities and relations, the R-SAT model achieves a performance of 0.34 and 0.45 for symptoms and medications respectively, which is significantly better than 0.18 and 0.35 for the baseline model. The contributions of different components of the model are quantified using ablation analysis.
Extracting structured clinical information from free-text radiology reports can enable the use of radiology report information for a variety of critical healthcare applications. In our work, we present RadGraph, a dataset of entities and relations in full-text chest X-ray radiology reports based on a novel information extraction schema we designed to structure radiology reports. We release a development dataset, which contains board-certified radiologist annotations for 500 radiology reports from the MIMIC-CXR dataset (14,579 entities and 10,889 relations), and a test dataset, which contains two independent sets of board-certified radiologist annotations for 100 radiology reports split equally across the MIMIC-CXR and CheXpert datasets. Using these datasets, we train and test a deep learning model, RadGraph Benchmark, that achieves a micro F1 of 0.82 and 0.73 on relation extraction on the MIMIC-CXR and CheXpert test sets respectively. Additionally, we release an inference dataset, which contains annotations automatically generated by RadGraph Benchmark across 220,763 MIMIC-CXR reports (around 6 million entities and 4 million relations) and 500 CheXpert reports (13,783 entities and 9,908 relations) with mappings to associated chest radiographs. Our freely available dataset can facilitate a wide range of research in medical natural language processing, as well as computer vision and multi-modal learning when linked to chest radiographs.
Open relation extraction is the task of extracting open-domain relation facts from natural language sentences. Existing works either utilize heuristics or distant-supervised annotations to train a supervised classifier over pre-defined relations, or adopt unsupervised methods with additional assumptions that have less discriminative power. In this work, we proposed a self-supervised framework named SelfORE, which exploits weak, self-supervised signals by leveraging large pretrained language model for adaptive clustering on contextualized relational features, and bootstraps the self-supervised signals by improving contextualized features in relation classification. Experimental results on three datasets show the effectiveness and robustness of SelfORE on open-domain Relation Extraction when comparing with competitive baselines.
Much of the user-generated content on social media is provided by ordinary people telling stories about their daily lives. We develop and test a novel method for learning fine-grained common-sense knowledge from these stories about contingent (causal and conditional) relationships between everyday events. This type of knowledge is useful for text and story understanding, information extraction, question answering, and text summarization. We test and compare different methods for learning contingency relation, and compare what is learned from topic-sorted story collections vs. general-domain stories. Our experiments show that using topic-specific datasets enables learning finer-grained knowledge about events and results in significant improvement over the baselines. An evaluation on Amazon Mechanical Turk shows 82% of the relations between events that we learn from topic-sorted stories are judged as contingent.
The clustering-based unsupervised relation discovery method has gradually become one of the important methods of open relation extraction (OpenRE). However, high-dimensional vectors can encode complex linguistic information which leads to the problem that the derived clusters cannot explicitly align with the relational semantic classes. In this work, we propose a relation-oriented clustering model and use it to identify the novel relations in the unlabeled data. Specifically, to enable the model to learn to cluster relational data, our method leverages the readily available labeled data of pre-defined relations to learn a relation-oriented representation. We minimize distance between the instance with same relation by gathering the instances towards their corresponding relation centroids to form a cluster structure, so that the learned representation is cluster-friendly. To reduce the clustering bias on predefined classes, we optimize the model by minimizing a joint objective on both labeled and unlabeled data. Experimental results show that our method reduces the error rate by 29.2% and 15.7%, on two datasets respectively, compared with current SOTA methods.
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