Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userSMedBERT: A Knowledge-Enhanced Pre-trained Language Model with Structured Semantics for Medical Text Mining
78
0
0.0
(
0
)
Added by
Taolin Zhang
Publication date
2021
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
Recently, the performance of Pre-trained Language Models (PLMs) has been significantly improved by injecting knowledge facts to enhance their abilities of language understanding. For medical domains, the background knowledge sources are especially useful, due to the massive medical terms and their complicated relations are difficult to understand in text. In this work, we introduce SMedBERT, a medical PLM trained on large-scale medical corpora, incorporating deep structured semantic knowledge from neighbors of linked-entity.In SMedBERT, the mention-neighbor hybrid attention is proposed to learn heterogeneous-entity information, which infuses the semantic representations of entity types into the homogeneous neighboring entity structure. Apart from knowledge integration as external features, we propose to employ the neighbors of linked-entities in the knowledge graph as additional global contexts of text mentions, allowing them to communicate via shared neighbors, thus enrich their semantic representations. Experiments demonstrate that SMedBERT significantly outperforms strong baselines in various knowledge-intensive Chinese medical tasks. It also improves the performance of other tasks such as question answering, question matching and natural language inference.
rate research
Read More
Biomedical text mining is becoming increasingly important as the number of biomedical documents rapidly grows. With the progress in natural language processing (NLP), extracting valuable information from biomedical literature has gained popularity among researchers, and deep learning has boosted the development of effective biomedical text mining models. However, directly applying the advancements in NLP to biomedical text mining often yields unsatisfactory results due to a word distribution shift from general domain corpora to biomedical corpora. In this article, we investigate how the recently introduced pre-trained language model BERT can be adapted for biomedical corpora. We introduce BioBERT (Bidirectional Encoder Representations from Transformers for Biomedical Text Mining), which is a domain-specific language representation model pre-trained on large-scale biomedical corpora. With almost the same architecture across tasks, BioBERT largely outperforms BERT and previous state-of-the-art models in a variety of biomedical text mining tasks when pre-trained on biomedical corpora. While BERT obtains performance comparable to that of previous state-of-the-art models, BioBERT significantly outperforms them on the following three representative biomedical text mining tasks: biomedical named entity recognition (0.62% F1 score improvement), biomedical relation extraction (2.80% F1 score improvement) and biomedical question answering (12.24% MRR improvement). Our analysis results show that pre-training BERT on biomedical corpora helps it to understand complex biomedical texts. We make the pre-trained weights of BioBERT freely available at https://github.com/naver/biobert-pretrained, and the source code for fine-tuning BioBERT available at https://github.com/dmis-lab/biobert.
In recent years, transformer-based language models have achieved state of the art performance in various NLP benchmarks. These models are able to extract mostly distributional information with some semantics from unstructured text, however it has proven challenging to integrate structured information, such as knowledge graphs into these models. We examine a variety of approaches to integrate structured knowledge into current language models and determine challenges, and possible opportunities to leverage both structured and unstructured information sources. From our survey, we find that there are still opportunities at exploiting adapter-based injections and that it may be possible to further combine various of the explored approaches into one system.
Recently, text world games have been proposed to enable artificial agents to understand and reason about real-world scenarios. These text-based games are challenging for artificial agents, as it requires understanding and interaction using natural language in a partially observable environment. In this paper, we improve the semantic understanding of the agent by proposing a simple RL with LM framework where we use transformer-based language models with Deep RL models. We perform a detailed study of our framework to demonstrate how our model outperforms all existing agents on the popular game, Zork1, to achieve a score of 44.7, which is 1.6 higher than the state-of-the-art model. Our proposed approach also performs comparably to the state-of-the-art models on the other set of text games.
Recent explorations of large-scale pre-trained language models (PLMs) such as GPT-3 have revealed the power of PLMs with huge amounts of parameters, setting off a wave of training ever-larger PLMs. However, training a large-scale PLM requires tremendous amounts of computational resources, which is time-consuming and expensive. In addition, existing large-scale PLMs are mainly trained from scratch individually, ignoring the availability of many existing well-trained PLMs. To this end, we explore the question that how can previously trained PLMs benefit training larger PLMs in future. Specifically, we introduce a novel pre-training framework named knowledge inheritance (KI), which combines both self-learning and teacher-guided learning to efficiently train larger PLMs. Sufficient experimental results demonstrate the feasibility of our KI framework. We also conduct empirical analyses to explore the effects of teacher PLMs pre-training settings, including model architecture, pre-training data, etc. Finally, we show that KI can well support lifelong learning and knowledge transfer.
Pre-trained language representation models (PLMs) cannot well capture factual knowledge from text. In contrast, knowledge embedding (KE) methods can effectively represent the relational facts in knowledge graphs (KGs) with informative entity embeddings, but conventional KE models cannot take full advantage of the abundant textual information. In this paper, we propose a unified model for Knowledge Embedding and Pre-trained LanguagE Representation (KEPLER), which can not only better integrate factual knowledge into PLMs but also produce effective text-enhanced KE with the strong PLMs. In KEPLER, we encode textual entity descriptions with a PLM as their embeddings, and then jointly optimize the KE and language modeling objectives. Experimental results show that KEPLER achieves state-of-the-art performances on various NLP tasks, and also works remarkably well as an inductive KE model on KG link prediction. Furthermore, for pre-training and evaluating KEPLER, we construct Wikidata5M, a large-scale KG dataset with aligned entity descriptions, and benchmark state-of-the-art KE methods on it. It shall serve as a new KE benchmark and facilitate the research on large KG, inductive KE, and KG with text. The source code can be obtained from https://github.com/THU-KEG/KEPLER.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
