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Random Convolution Kernels with Multi-Scale Decomposition for Preterm EEG Inter-burst Detection

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 Added by Christopher Lundy
 Publication date 2021
and research's language is English




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Linear classifiers with random convolution kernels are computationally efficient methods that need no design or domain knowledge. Unlike deep neural networks, there is no need to hand-craft a network architecture; the kernels are randomly generated and only the linear classifier needs training. A recently proposed method, RandOm Convolutional KErnel Transforms (ROCKETs), has shown high accuracy across a range of time-series data sets. Here we propose a multi-scale version of this method, using both high- and low-frequency components. We apply our methods to inter-burst detection in a cohort of preterm EEG recorded from 36 neonates <30 weeks gestational age. Two features from the convolution of 10,000 random kernels are combined using ridge regression. The proposed multi-scale ROCKET method out-performs the method without scale: median (interquartile range, IQR) Matthews correlation coefficient (MCC) of 0.859 (0.815 to 0.874) for multi-scale versus 0.841 (0.807 to 0.865) without scale, p<0.001. The proposed method lags behind an existing feature-based machine learning method developed with deep domain knowledge, but is fast to train and can quickly set an initial baseline threshold of performance for generic and biomedical time-series classification.



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The study of electroencephalographic (EEG) bursts in preterm infants provides valuable information about maturation or prognostication after perinatal asphyxia. Over the last two decades, a number of works proposed algorithms to automatically detect EEG bursts in preterm infants, but they were designed for populations under 35 weeks of post menstrual age (PMA). However, as the brain activity evolves rapidly during postnatal life, these solutions might be under-performing with increasing PMA. In this work we focused on preterm infants reaching term ages (PMA $geq$ 36 weeks) using multi-feature classification on a single EEG channel. Five EEG burst detectors relying on different machine learning approaches were compared: Logistic regression (LR), linear discriminant analysis (LDA), k-nearest neighbors (kNN), support vector machines (SVM) and thresholding (Th). Classifiers were trained by visually labeled EEG recordings from 14 very preterm infants (born after 28 weeks of gestation) with 36 - 41 weeks PMA. The most performing classifiers reached about 95% accuracy (kNN, SVM and LR) whereas Th obtained 84%. Compared to human-automatic agreements, LR provided the highest scores (Cohens kappa = 0.71) and the best computational efficiency using only three EEG features. Applying this classifier in a test database of 21 infants $geq$ 36 weeks PMA, we show that long EEG bursts and short inter-bust periods are characteristic of infants with the highest PMA and weights. In view of these results, LR-based burst detection could be a suitable tool to study maturation in monitoring or portable devices using a single EEG channel.
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