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Register a new userBacteria hinder large-scale transport and enhance small-scale mixing in time-periodic flows
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Understanding mixing and transport of passive scalars in active fluids is important to many natural (e.g. algal blooms) and industrial (e.g. biofuel, vaccine production) processes. Here, we study the mixing of a passive scalar (dye) in dilute suspensions of swimming Escherichia coli in experiments using a two-dimensional (2D) time-periodic flow and in a simple simulation. Results show that the presence of bacteria hinders large scale transport and reduce overall mixing rate. Stretching fields, calculated from experimentally measured velocity fields, show that bacterial activity attenuates fluid stretching and lowers flow chaoticity. Simulations suggest that this attenuation may be attributed to a transient accumulation of bacteria along regions of high stretching. Spatial power spectra and correlation functions of dye concentration fields show that the transport of scalar variance across scales is also hindered by bacterial activity, resulting in an increase in average size and lifetime of structures. On the other hand, at small scales, activity seems to enhance local mixing. One piece of evidence is that the probability distribution of the spatial concentration gradients is nearly symmetric with a vanishing skewness. Overall, our results show that the coupling between activity and flow can lead to nontrivial effects on mixing and transport.
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The collective motion of microswimmers in suspensions induce patterns of vortices on scales that are much larger than the characteristic size of a microswimmer, attaining a state called bacterial turbulence. Hydrodynamic turbulence acts on even larger scales and is dominated by inertial transport of energy. Using an established modification of the Navier-Stokes equation that accounts for the small scale forcing of hydrodynamic flow by microswimmers, we study the properties of a dense supensions of microswimmers in two dimensions, where the conservation of enstrophy can drive an inverse cascade through which energy is accumulated on the largest scales. We find that the dynamical and statistical properties of the flow show a sharp transition to the formation of vortices at the largest length scale. The results show that 2d bacterial and hydrodynamic turbulence are separated by a subcritical phase transition.
Magnetohydrodynamical (MHD) dynamos emerge in many different astrophysical situations where turbulence is present, but the interaction between large-scale (LSD) and small-scale dynamos (SSD) is not fully understood. We performed a systematic study of turbulent dynamos driven by isotropic forcing in isothermal MHD with magnetic Prandtl number of unity, focusing on the exponential growth stage. Both helical and non-helical forcing was employed to separate the effects of LSD and SSD in a periodic domain. Reynolds numbers (Rm) up to $approx 250$ were examined and multiple resolutions used for convergence checks. We ran our simulations with the Astaroth code, designed to accelerate 3D stencil computations on graphics processing units (GPUs) and to employ multiple GPUs with peer-to-peer communication. We observed a speedup of $approx 35$ in single-node performance compared to the widely used multi-CPU MHD solver Pencil Code. We estimated the growth rates both from the averaged magnetic fields and their power spectra. At low Rm, LSD growth dominates, but at high Rm SSD appears to dominate in both helically and non-helically forced cases. Pure SSD growth rates follow a logarithmic scaling as a function of Rm. Probability density functions of the magnetic field from the growth stage exhibit SSD behaviour in helically forced cases even at intermediate Rm. We estimated mean-field turbulence transport coefficients using closures like the second-order correlation approximation (SOCA). They yield growth rates similar to the directly measured ones and provide evidence of $alpha$ quenching. Our results are consistent with the SSD inhibiting the growth of the LSD at moderate Rm, while the dynamo growth is enhanced at higher Rm.
We examine long-time properties of the ideal dynamics of three--dimensional flows, in the presence or not of an imposed solid-body rotation and with or without helicity (velocity-vorticity correlation). In all cases the results agree with the isotropic predictions stemming from statistical mechanics. No accumulation of excitation occurs in the large scales, even though in the dissipative rotating case anisotropy and accumulation, in the form of an inverse cascade of energy, are known to occur. We attribute this latter discrepancy to the linearity of the term responsible for the emergence of inertial waves. At intermediate times, inertial energy spectra emerge that differ somewhat from classical wave-turbulence expectations, and with a trace of large-scale excitation that goes away for long times. These results are discussed in the context of partial two-dimensionalization of the flow undergoing strong rotation as advocated by several authors.
Recent studies show that spherical motile micro-organisms in turbulence subject to gravitational torques gather in down-welling regions of the turbulent flow. By analysing a statistical model we analytically compute how shape affects the dynamics, preferential sampling, and small-scale spatial clustering. We find that oblong organisms may spend more time in up-welling regions of the flow, and that all organisms are biased to regions of positive fluid-velocity gradients in the upward direction. We analyse small-scale spatial clustering and find that oblong particles may either cluster more or less than spherical ones, depending on the strength of the gravitational torques.
Non-Gaussian statistics of large-scale fields are routinely observed in data from atmospheric and oceanic campaigns and global models. Recent direct numerical simulations (DNSs) showed that large-scale intermittency in stably stratified flows is due to the emergence of sporadic, extreme events in the form of bursts in the vertical velocity and the temperature. This phenomenon results from the interplay between waves and turbulent motions, affecting mixing. We provide evidence of the enhancement of the classical small-scale (or internal) intermittency due to the emergence of large-scale drafts, connecting large- and small-scale bursts. To this aim we analyze a large set of DNSs of the stably stratified Boussinesq equations over a wide range of values of the Froude number ($Frapprox 0.01-1$). The variation of the buoyancy field kurtosis with $Fr$ is similar to (though with smaller values than) the kurtosis of the vertical velocity, both showing a non-monotonic trend. We present a mechanism for the generation of extreme vertical drafts and vorticity enhancements which follows from the exact equations for field gradients.
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