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Identifying the fragment structure of the organic compounds by deeply learning the original NMR data

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 Publication date 2021
and research's language is English




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We preprocess the raw NMR spectrum and extract key characteristic features by using two different methodologies, called equidistant sampling and peak sampling for subsequent substructure pattern recognition; meanwhile may provide the alternative strategy to address the imbalance issue of the NMR dataset frequently encountered in dataset collection of statistical modeling and establish two conventional SVM and KNN models to assess the capability of two feature selection, respectively. Our results in this study show that the models using the selected features of peak sampling outperform the ones using the other. Then we build the Recurrent Neural Network (RNN) model trained by Data B collected from peak sampling. Furthermore, we illustrate the easier optimization of hyper parameters and the better generalization ability of the RNN deep learning model by comparison with traditional machine learning SVM and KNN models in detail.



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This paper presents a method to identify substructures in NMR spectra of mixtures, specifically 2D spectra, using a bespoke image-based Convolutional Neural Network application. This is done using HSQC and HMBC spectra separately and in combination. The application can reliably detect substructures in pure compounds, using a simple network. It can work for mixtures when trained on pure compounds only. HMBC data and the combination of HMBC and HSQC show better results than HSQC alone.
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