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Register a new userpyWATTS: Python Workflow Automation Tool for Time Series
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Added by
Kaleb Phipps
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Time series data are fundamental for a variety of applications, ranging from financial markets to energy systems. Due to their importance, the number and complexity of tools and methods used for time series analysis is constantly increasing. However, due to unclear APIs and a lack of documentation, researchers struggle to integrate them into their research projects and replicate results. Additionally, in time series analysis there exist many repetitive tasks, which are often re-implemented for each project, unnecessarily costing time. To solve these problems we present texttt{pyWATTS}, an open-source Python-based package that is a non-sequential workflow automation tool for the analysis of time series data. pyWATTS includes modules with clearly defined interfaces to enable seamless integration of new or existing methods, subpipelining to easily reproduce repetitive tasks, load and save functionality to simply replicate results, and native support for key Python machine learning libraries such as scikit-learn, PyTorch, and Keras.
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Seglearn is an open-source python package for machine learning time series or sequences using a sliding window segmentation approach. The implementation provides a flexible pipeline for tackling classification, regression, and forecasting problems with multivariate sequence and contextual data. This package is compatible with scikit-learn and is listed under scikit-learn Related Projects. The package depends on numpy, scipy, and scikit-learn. Seglearn is distributed under the BSD 3-Clause License. Documentation includes a detailed API description, user guide, and examples. Unit tests provide a high degree of code coverage.
This paper presents a systematic review of Python packages with a focus on time series analysis. The objective is to provide (1) an overview of the different time series analysis tasks and preprocessing methods implemented, and (2) an overview of the development characteristics of the packages (e.g., documentation, dependencies, and community size). This review is based on a search of literature databases as well as GitHub repositories. Following the filtering process, 40 packages were analyzed. We classified the packages according to the analysis tasks implemented, the methods related to data preparation, and the means for evaluating the results produced (methods and access to evaluation data). We also reviewed documentation aspects, the licenses, the size of the packages community, and the dependencies used. Among other things, our results show that forecasting is by far the most frequently implemented task, that half of the packages provide access to real datasets or allow generating synthetic data, and that many packages depend on a few libraries (the most used ones being numpy, scipy and pandas). We hope that this review can help practitioners and researchers navigate the space of Python packages dedicated to time series analysis. We will provide an updated list of the reviewed packages online at https://siebert-julien.github.io/time-series-analysis-python/.
Multivariate time series naturally exist in many fields, like energy, bioinformatics, signal processing, and finance. Most of these applications need to be able to compare these structured data. In this context, dynamic time warping (DTW) is probably the most common comparison measure. However, not much research effort has been put into improving it by learning. In this paper, we propose a novel method for learning similarities based on DTW, in order to improve time series classification. Making use of the uniform stability framework, we provide the first theoretical guarantees in the form of a generalization bound for linear classification. The experimental study shows that the proposed approach is efficient, while yielding sparse classifiers.
Time-series representation learning is a fundamental task for time-series analysis. While significant progress has been made to achieve accurate representations for downstream applications, the learned representations often lack interpretability and do not expose semantic meanings. Different from previous efforts on the entangled feature space, we aim to extract the semantic-rich temporal correlations in the latent interpretable factorized representation of the data. Motivated by the success of disentangled representation learning in computer vision, we study the possibility of learning semantic-rich time-series representations, which remains unexplored due to three main challenges: 1) sequential data structure introduces complex temporal correlations and makes the latent representations hard to interpret, 2) sequential models suffer from KL vanishing problem, and 3) interpretable semantic concepts for time-series often rely on multiple factors instead of individuals. To bridge the gap, we propose Disentangle Time Series (DTS), a novel disentanglement enhancement framework for sequential data. Specifically, to generate hierarchical semantic concepts as the interpretable and disentangled representation of time-series, DTS introduces multi-level disentanglement strategies by covering both individual latent factors and group semantic segments. We further theoretically show how to alleviate the KL vanishing problem: DTS introduces a mutual information maximization term, while preserving a heavier penalty on the total correlation and the dimension-wise KL to keep the disentanglement property. Experimental results on various real-world benchmark datasets demonstrate that the representations learned by DTS achieve superior performance in downstream applications, with high interpretability of semantic concepts.
Time series data analytics has been a problem of substantial interests for decades, and Dynamic Time Warping (DTW) has been the most widely adopted technique to measure dissimilarity between time series. A number of global-alignment kernels have since been proposed in the spirit of DTW to extend its use to kernel-based estimation method such as support vector machine. However, those kernels suffer from diagonal dominance of the Gram matrix and a quadratic complexity w.r.t. the sample size. In this work, we study a family of alignment-aware positive definite (p.d.) kernels, with its feature embedding given by a distribution of emph{Random Warping Series (RWS)}. The proposed kernel does not suffer from the issue of diagonal dominance while naturally enjoys a emph{Random Features} (RF) approximation, which reduces the computational complexity of existing DTW-based techniques from quadratic to linear in terms of both the number and the length of time-series. We also study the convergence of the RF approximation for the domain of time series of unbounded length. Our extensive experiments on 16 benchmark datasets demonstrate that RWS outperforms or matches state-of-the-art classification and clustering methods in both accuracy and computational time. Our code and data is available at { url{https://github.com/IBM/RandomWarpingSeries}}.
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