PSR J$1946+3417$ is a millisecond pulsar (MSP) with a spin period $Psimeq3.17rm~ms$. Harbored in a binary with an orbital period $P_{rm b}simeq27$ days, the MSP is accompanied by a white dwarf (WD). The masses of the MSP and the WD were determined to be $1.83rm~M_odot$ and $0.266rm~M_odot$, respectively. Specially, its orbital eccentricity is $esimeq0.134$, which is challenging the recycling model of MSPs. Assuming that the neutron star in a binary may collapse to a strange star when its mass reaches a critical limit, we propose a phase transition (PT) scenario to account for the origin of the system. The sudden mass loss and the kick induced by asymmetric collapse during the PT may result in the orbital eccentricity. If the PT event takes place after the mass transfer ceases, the eccentric orbit can not be re-circularized in the Hubble time. Aiming at the masses of both components, we simulate the evolution of the progenitor of PSR J$1946+3417$ via texttt{MESA}. The simulations show that a NS / main sequence star binary with initial masses of $1.4+1.6rm~M_odot$ in an initial orbit of 2.59 days will evolve into a binary consisting of a $2.0rm~M_odot$ MSP and a $0.27rm~M_odot$ WD in an orbit of $sim21.5$ days. Assuming that the gravitational mass loss fraction during PT is $10%$, we simulate the effect of PT via the kick program of texttt{BSE} with a velocity of $sigma_{rm PT}=60~{rm km~s}^{-1}$. The results show that the PT scenario can reproduce the observed orbital period and eccentricity with higher probability then other values.
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