We analyze the stability properties of the so-called triple deck model, a classical refinement of the Prandtl equation to describe boundary layer separation. Combining the methodology introduced in [2], based on complex analysis tools, and stability estimates inspired from [3], we exhibit unstable linearizations of the triple deck equation. The growth rates of the corresponding unstable eigenmodes scale linearly with the tangential frequency. This shows that the recent result of Iyer and Vicol [11] of local well-posedness for analytic data is essentially optimal.