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Register a new userLGD-GCN: Local and Global Disentangled Graph Convolutional Networks
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Added by
Jingwei Guo
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Disentangled Graph Convolutional Network (DisenGCN) is an encouraging framework to disentangle the latent factors arising in a real-world graph. However, it relies on disentangling information heavily from a local range (i.e., a node and its 1-hop neighbors), while the local information in many cases can be uneven and incomplete, hindering the interpretabiliy power and model performance of DisenGCN. In this paper, we introduce a novel Local and Global Disentangled Graph Convolutional Network (LGD-GCN) to capture both local and global information for graph disentanglement. LGD-GCN performs a statistical mixture modeling to derive a factor-aware latent continuous space, and then constructs different structures w.r.t. different factors from the revealed space. In this way, the global factor-specific information can be efficiently and selectively encoded via a message passing along these built structures, strengthening the intra-factor consistency. We also propose a novel diversity promoting regularizer employed with the latent space modeling, to encourage inter-factor diversity. Evaluations of the proposed LGD-GCN on the synthetic and real-world datasets show a better interpretability and improved performance in node classification over the existing competitive models.
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Graph convolutional networks (GCNs) have shown promising results in processing graph data by extracting structure-aware features. This gave rise to extensive work in geometric deep learning, focusing on designing network architectures that ensure neuron activations conform to regularity patterns within the input graph. However, in most cases the graph structure is only accounted for by considering the similarity of activations between adjacent nodes, which limits the capabilities of such methods to discriminate between nodes in a graph. Here, we propose to augment conventional GCNs with geometric scattering transforms and residual convolutions. The former enables band-pass filtering of graph signals, thus alleviating the so-called oversmoothing often encountered in GCNs, while the latter is introduced to clear the resulting features of high-frequency noise. We establish the advantages of the presented Scattering GCN with both theoretical results establishing the complementary benefits of scattering and GCN features, as well as experimental results showing the benefits of our method compared to leading graph neural networks for semi-supervised node classification, including the recently proposed GAT network that typically alleviates oversmoothing using graph attention mechanisms.
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Predicting DNA-protein binding is an important and classic problem in bioinformatics. Convolutional neural networks have outperformed conventional methods in modeling the sequence specificity of DNA-protein binding. However, none of the studies has utilized graph convolutional networks for motif inference. In this work, we propose to use graph convolutional networks for motif inference. We build a sequence k-mer graph for the whole dataset based on k-mer co-occurrence and k-mer sequence relationship and then learn DNA Graph Convolutional Network (DNA-GCN) for the whole dataset. Our DNA-GCN is initialized with a one-hot representation for all nodes, and it then jointly learns the embeddings for both k-mers and sequences, as supervised by the known labels of sequences. We evaluate our model on 50 datasets from ENCODE. DNA-GCN shows its competitive performance compared with the baseline model. Besides, we analyze our model and design several different architectures to help fit different datasets.
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