We study fractional boundary charges (FBCs) for two classes of strongly interacting systems. First, we study strongly interacting nanowires subjected to a periodic potential with a period that is a rational fraction of the Fermi wavelength. For sufficiently strong interactions, the periodic potential leads to the opening of a charge density wave gap at the Fermi level. The FBC then depends linearly on the phase offset of the potential with a quantized slope determined by the period. Furthermore, different possible values for the FBC at a fixed phase offset label different degenerate ground states of the system that cannot be connected adiabatically. Next, we turn to the fractional quantum Hall effect (FQHE) at odd filling factors $ u=1/(2l+1)$, where $l$ is an integer. For a Corbino disk threaded by an external flux, we find that the FBC depends linearly on the flux with a quantized slope that is determined by the filling factor. Again, the FBC has $2l+1$ different branches that cannot be connected adiabatically, reflecting the $(2l+1)$-fold degeneracy of the ground state. These results allow for several promising and strikingly simple ways to probe strongly interacting phases via boundary charge measurements.
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