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Register a new userA fast two-stage algorithm for non-negative matrix factorization in streaming data
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Added by
Ran Gu
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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In this article, we study algorithms for nonnegative matrix factorization (NMF) in various applications involving streaming data. Utilizing the continual nature of the data, we develop a fast two-stage algorithm for highly efficient and accurate NMF. In the first stage, an alternating non-negative least squares (ANLS) framework is used, in combination with active set method with warm-start strategy for the solution of subproblems. In the second stage, an interior point method is adopted to accelerate the local convergence. The convergence of the proposed algorithm is proved. The new algorithm is compared with some existing algorithms in benchmark tests using both real-world data and synthetic data. The results demonstrate the advantage of our algorithm in finding high-precision solutions.
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Matrix completion is a ubiquitous tool in machine learning and data analysis. Most work in this area has focused on the number of observations necessary to obtain an accurate low-rank approximation. In practice, however, the cost of observations is an important limiting factor, and experimentalists may have on hand multiple modes of observation with differing noise-vs-cost trade-offs. This paper considers matrix completion subject to such constraints: a budget is imposed and the experimentalists goal is to allocate this budget between two sampling modalities in order to recover an accurate low-rank approximation. Specifically, we consider that it is possible to obtain low noise, high cost observations of individual entries or high noise, low cost observations of entire columns. We introduce a regression-based completion algorithm for this setting and experimentally verify the performance of our approach on both synthetic and real data sets. When the budget is low, our algorithm outperforms standard completion algorithms. When the budget is high, our algorithm has comparable error to standard nuclear norm completion algorithms and requires much less computational effort.
We validate the use of matrix factorization for the automatic identification of relevant components from atomic pair distribution function (PDF) data. We also present a newly developed software infrastructure for analyzing the PDF data arriving in streaming manner. We then apply two matrix factorization techniques, Principal Component Analysis (PCA) and Non-negative Matrix Factorization (NMF), to study simulated and experiment datasets in the context of in situ experiment.
In the non-negative matrix factorization (NMF) problem, the input is an $mtimes n$ matrix $M$ with non-negative entries and the goal is to factorize it as $Mapprox AW$. The $mtimes k$ matrix $A$ and the $ktimes n$ matrix $W$ are both constrained to have non-negative entries. This is in contrast to singular value decomposition, where the matrices $A$ and $W$ can have negative entries but must satisfy the orthogonality constraint: the columns of $A$ are orthogonal and the rows of $W$ are also orthogonal. The orthogonal non-negative matrix factorization (ONMF) problem imposes both the non-negativity and the orthogonality constraints, and previous work showed that it leads to better performances than NMF on many clustering tasks. We give the first constant-factor approximation algorithm for ONMF when one or both of $A$ and $W$ are subject to the orthogonality constraint. We also show an interesting connection to the correlation clustering problem on bipartite graphs. Our experiments on synthetic and real-world data show that our algorithm achieves similar or smaller errors compared to previous ONMF algorithms while ensuring perfect orthogonality (many previous algorithms do not satisfy the hard orthogonality constraint).
In this paper we explore avenues for improving the reliability of dimensionality reduction methods such as Non-Negative Matrix Factorization (NMF) as interpretive exploratory data analysis tools. We first explore the difficulties of the optimization problem underlying NMF, showing for the first time that non-trivial NMF solutions always exist and that the optimization problem is actually convex, by using the theory of Completely Positive Factorization. We subsequently explore four novel approaches to finding globally-optimal NMF solutions using various ideas from convex optimization. We then develop a new method, isometric NMF (isoNMF), which preserves non-negativity while also providing an isometric embedding, simultaneously achieving two properties which are helpful for interpretation. Though it results in a more difficult optimization problem, we show experimentally that the resulting method is scalable and even achieves more compact spectra than standard NMF.
Matrix factorization (MF) has been widely used to discover the low-rank structure and to predict the missing entries of data matrix. In many real-world learning systems, the data matrix can be very high-dimensional but sparse. This poses an imbalanced learning problem, since the scale of missing entries is usually much larger than that of observed entries, but they cannot be ignored due to the valuable negative signal. For efficiency concern, existing work typically applies a uniform weight on missing entries to allow a fast learning algorithm. However, this simplification will decrease modeling fidelity, resulting in suboptimal performance for downstream applications. In this work, we weight the missing data non-uniformly, and more generically, we allow any weighting strategy on the missing data. To address the efficiency challenge, we propose a fast learning method, for which the time complexity is determined by the number of observed entries in the data matrix, rather than the matrix size. The key idea is two-fold: 1) we apply truncated SVD on the weight matrix to get a more compact representation of the weights, and 2) we learn MF parameters with element-wise alternating least squares (eALS) and memorize the key intermediate variables to avoid repeating computations that are unnecessary. We conduct extensive experiments on two recommendation benchmarks, demonstrating the correctness, efficiency, and effectiveness of our fast eALS method.
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