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Register a new userPyTorch-Direct: Enabling GPU Centric Data Access for Very Large Graph Neural Network Training with Irregular Accesses
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Added by
Seung Won Min
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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With the increasing adoption of graph neural networks (GNNs) in the machine learning community, GPUs have become an essential tool to accelerate GNN training. However, training GNNs on very large graphs that do not fit in GPU memory is still a challenging task. Unlike conventional neural networks, mini-batching input samples in GNNs requires complicated tasks such as traversing neighboring nodes and gathering their feature values. While this process accounts for a significant portion of the training time, we find existing GNN implementations using popular deep neural network (DNN) libraries such as PyTorch are limited to a CPU-centric approach for the entire data preparation step. This all-in-CPU approach has negative impact on the overall GNN training performance as it over-utilizes CPU resources and hinders GPU acceleration of GNN training. To overcome such limitations, we introduce PyTorch-Direct, which enables a GPU-centric data accessing paradigm for GNN training. In PyTorch-Direct, GPUs are capable of efficiently accessing complicated data structures in host memory directly without CPU intervention. Our microbenchmark and end-to-end GNN training results show that PyTorch-Direct reduces data transfer time by 47.1% on average and speeds up GNN training by up to 1.6x. Furthermore, by reducing CPU utilization, PyTorch-Direct also saves system power by 12.4% to 17.5% during training. To minimize programmer effort, we introduce a new unified tensor type along with necessary changes to the PyTorch memory allocator, dispatch logic, and placement rules. As a result, users need to change at most two lines of their PyTorch GNN training code for each tensor object to take advantage of PyTorch-Direct.
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Graph Convolutional Networks (GCNs) are increasingly adopted in large-scale graph-based recommender systems. Training GCN requires the minibatch generator traversing graphs and sampling the sparsely located neighboring nodes to obtain their features. Since real-world graphs often exceed the capacity of GPU memory, current GCN training systems keep the feature table in host memory and rely on the CPU to collect sparse features before sending them to the GPUs. This approach, however, puts tremendous pressure on host memory bandwidth and the CPU. This is because the CPU needs to (1) read sparse features from memory, (2) write features into memory as a dense format, and (3) transfer the features from memory to the GPUs. In this work, we propose a novel GPU-oriented data communication approach for GCN training, where GPU threads directly access sparse features in host memory through zero-copy accesses without much CPU help. By removing the CPU gathering stage, our method significantly reduces the consumption of the host resources and data access latency. We further present two important techniques to achieve high host memory access efficiency by the GPU: (1) automatic data access address alignment to maximize PCIe packet efficiency, and (2) asynchronous zero-copy access and kernel execution to fully overlap data transfer with training. We incorporate our method into PyTorch and evaluate its effectiveness using several graphs with sizes up to 111 million nodes and 1.6 billion edges. In a multi-GPU training setup, our method is 65-92% faster than the conventional data transfer method, and can even match the performance of all-in-GPU-memory training for some graphs that fit in GPU memory.
The ever-growing computational demands of increasingly complex machine learning models frequently necessitate the use of powerful cloud-based infrastructure for their training. Binary neural networks are known to be promising candidates for on-device inference due to their extreme compute and memory savings over higher-precision alternatives. However, their existing training methods require the concurrent storage of high-precision activations for all layers, generally making learning on memory-constrained devices infeasible. In this paper, we demonstrate that the backward propagation operations needed for binary neural network training are strongly robust to quantization, thereby making on-the-edge learning with modern models a practical proposition. We introduce a low-cost binary neural network training strategy exhibiting sizable memory footprint and energy reductions while inducing little to no accuracy loss vs Courbariaux & Bengios standard approach. These resource decreases are primarily enabled through the retention of activations exclusively in binary format. Against the latter algorithm, our drop-in replacement sees coincident memory requirement and energy consumption drops of 2--6$times$, while reaching similar test accuracy in comparable time, across a range of small-scale models trained to classify popular datasets. We also demonstrate from-scratch ImageNet training of binarized ResNet-18, achieving a 3.12$times$ memory reduction. Such savings will allow for unnecessary cloud offloading to be avoided, reducing latency, increasing energy efficiency and safeguarding privacy.
Graph representation learning has emerged as a powerful technique for addressing real-world problems. Various downstream graph learning tasks have benefited from its recent developments, such as node classification, similarity search, and graph classification. However, prior arts on graph representation learning focus on domain specific problems and train a dedicated model for each graph dataset, which is usually non-transferable to out-of-domain data. Inspired by the recent advances in pre-training from natural language processing and computer vision, we design Graph Contrastive Coding (GCC) -- a self-supervised graph neural network pre-training framework -- to capture the universal network topological properties across multiple networks. We design GCCs pre-training task as subgraph instance discrimination in and across networks and leverage contrastive learning to empower graph neural networks to learn the intrinsic and transferable structural representations. We conduct extensive experiments on three graph learning tasks and ten graph datasets. The results show that GCC pre-trained on a collection of diverse datasets can achieve competitive or better performance to its task-specific and trained-from-scratch counterparts. This suggests that the pre-training and fine-tuning paradigm presents great potential for graph representation learning.
There were many algorithms to substitute the back-propagation (BP) in the deep neural network (DNN) training. However, they could not become popular because their training accuracy and the computational efficiency were worse than BP. One of them was direct feedback alignment (DFA), but it showed low training performance especially for the convolutional neural network (CNN). In this paper, we overcome the limitation of the DFA algorithm by combining with the conventional BP during the CNN training. To improve the training stability, we also suggest the feedback weight initialization method by analyzing the patterns of the fixed random matrices in the DFA. Finally, we propose the new training algorithm, binary direct feedback alignment (BDFA) to minimize the computational cost while maintaining the training accuracy compared with the DFA. In our experiments, we use the CIFAR-10 and CIFAR-100 dataset to simulate the CNN learning from the scratch and apply the BDFA to the online learning based object tracking application to examine the training in the small dataset environment. Our proposed algorithms show better performance than conventional BP in both two different training tasks especially when the dataset is small.
Graph Neural Networks (GNNs) are a new and increasingly popular family of deep neural network architectures to perform learning on graphs. Training them efficiently is challenging due to the irregular nature of graph data. The problem becomes even more challenging when scaling to large graphs that exceed the capacity of single devices. Standard approaches to distributed DNN training, such as data and model parallelism, do not directly apply to GNNs. Instead, two different approaches have emerged in the literature: whole-graph and sample-based training. In this paper, we review and compare the two approaches. Scalability is challenging with both approaches, but we make a case that research should focus on sample-based training since it is a more promising approach. Finally, we review recent systems supporting sample-based training.
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