The direct detection of gravitational waves offers an exciting new window onto our Universe. At the same time, multiple observational evidence and theoretical considerations motivate the presence of physics beyond the Standard Model. In this thesis, we explore new ways of probing particle physics in the era of gravitational-wave astronomy. We focus on the signatures of ultralight bosons on the gravitational waves emitted by binary systems, demonstrating how binary black holes are novel detectors of this class of dark matter. We also discuss probes of other types of new physics through their finite-size imprints on gravitational waveforms, and examine the extent to which current template-bank searches could be used to detect these signals. In the first two chapters of this thesis, we review several aspects of gravitational-wave physics and particle physics at the weak coupling frontier; we hope the reader would find these reviews helpful in delving further into the literature and in their research.