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Register a new userJoint integrative analysis of multiple data sources with correlated vector outcomes
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Emily C Hector
Publication date
2020
fields
Mathematical Statistics
and research's language is
English
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We propose a distributed quadratic inference function framework to jointly estimate regression parameters from multiple potentially heterogeneous data sources with correlated vector outcomes. The primary goal of this joint integrative analysis is to estimate covariate effects on all outcomes through a marginal regression model in a statistically and computationally efficient way. We develop a data integration procedure for statistical estimation and inference of regression parameters that is implemented in a fully distributed and parallelized computational scheme. To overcome computational and modeling challenges arising from the high-dimensional likelihood of the correlated vector outcomes, we propose to analyze each data source using Qu, Lindsay and Li (2000)s quadratic inference functions, and then to jointly reestimate parameters from each data source by accounting for correlation between data sources using a combined meta-estimator in a similar spirit to Hansen (1982)s generalised method of moments. We show both theoretically and numerically that the proposed method yields efficiency improvements and is computationally fast. We illustrate the proposed methodology with the joint integrative analysis of the association between smoking and metabolites in a large multi-cohort study and provide an R package for ease of implementation.
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Multi-task learning is increasingly used to investigate the association structure between multiple responses and a single set of predictor variables in many applications. In the era of big data, the coexistence of incomplete outcomes, large number of responses, and high dimensionality in predictors poses unprecedented challenges in estimation, prediction, and computation. In this paper, we propose a scalable and computationally efficient procedure, called PEER, for large-scale multi-response regression with incomplete outcomes, where both the numbers of responses and predictors can be high-dimensional. Motivated by sparse factor regression, we convert the multi-response regression into a set of univariate-response regressions, which can be efficiently implemented in parallel. Under some mild regularity conditions, we show that PEER enjoys nice sampling properties including consistency in estimation, prediction, and variable selection. Extensive simulation studies show that our proposal compares favorably with several existing methods in estimation accuracy, variable selection, and computation efficiency.
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