Internal states of polar molecules can be controlled by microwave-frequency electric dipole transitions. If the applied microwave electric field has a spatial gradient, these transitions also affect the motion of these dipolar particles. This capability can be used to engineer phonon-mediated quantum gates between e.g. trapped polar molecular ion qubits without laser illumination and without the need for cooling near the motional ground state. The result is a high-speed quantum processing toolbox for dipoles in thermal motion that combines the precision microwave control of solid-state qubits with the long coherence times of trapped ion qubits.