Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userCan questions summarize a corpus? Using question generation for characterizing COVID-19 research
163
0
0.0
(
0
)
Added by
Gabriela Surita
Publication date
2020
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
What are the latent questions on some textual data? In this work, we investigate using question generation models for exploring a collection of documents. Our method, dubbed corpus2question, consists of applying a pre-trained question generation model over a corpus and aggregating the resulting questions by frequency and time. This technique is an alternative to methods such as topic modelling and word cloud for summarizing large amounts of textual data. Results show that applying corpus2question on a corpus of scientific articles related to COVID-19 yields relevant questions about the topic. The most frequent questions are what is covid 19 and what is the treatment for covid. Among the 1000 most frequent questions are what is the threshold for herd immunity and what is the role of ace2 in viral entry. We show that the proposed method generated similar questions for 13 of the 27 expert-made questions from the CovidQA question answering dataset. The code to reproduce our experiments and the generated questions are available at: https://github.com/unicamp-dl/corpus2question
rate research
Read More
The world has seen in 2020 an unprecedented global outbreak of SARS-CoV-2, a new strain of coronavirus, causing the COVID-19 pandemic, and radically changing our lives and work conditions. Many scientists are working tirelessly to find a treatment and a possible vaccine. Furthermore, governments, scientific institutions and companies are acting quickly to make resources available, including funds and the opening of large-volume data repositories, to accelerate innovation and discovery aimed at solving this pandemic. In this paper, we develop a novel automated theme-based visualisation method, combining advanced data modelling of large corpora, information mapping and trend analysis, to provide a top-down and bottom-up browsing and search interface for quick discovery of topics and research resources. We apply this method on two recently released publications datasets (Dimensions COVID-19 dataset and the Allen Institute for AIs CORD-19). The results reveal intriguing information including increased efforts in topics such as social distancing; cross-domain initiatives (e.g. mental health and education); evolving research in medical topics; and the unfolding trajectory of the virus in different territories through publications. The results also demonstrate the need to quickly and automatically enable search and browsing of large corpora. We believe our methodology will improve future large volume visualisation and discovery systems but also hope our visualisation interfaces will currently aid scientists, researchers, and the general public to tackle the numerous issues in the fight against the COVID-19 pandemic.
Typically, Open Information Extraction (OpenIE) focuses on extracting triples, representing a subject, a relation, and the object of the relation. However, most of the existing techniques are based on a predefined set of relations in each domain which limits their applicability to newer domains where these relations may be unknown such as financial documents. This paper presents a zero-shot open information extraction technique that extracts the entities (value) and their descriptions (key) from a sentence, using off the shelf machine reading comprehension (MRC) Model. The input questions to this model are created using a novel noun phrase generation method. This method takes the context of the sentence into account and can create a wide variety of questions making our technique domain independent. Given the questions and the sentence, our technique uses the MRC model to extract entities (value). The noun phrase corresponding to the question, with the highest confidence, is taken as the description (key). This paper also introduces the EDGAR10-Q dataset which is based on publicly available financial documents from corporations listed in US securities and exchange commission (SEC). The dataset consists of paragraphs, tagged values (entities), and their keys (descriptions) and is one of the largest among entity extraction datasets. This dataset will be a valuable addition to the research community, especially in the financial domain. Finally, the paper demonstrates the efficacy of the proposed technique on the EDGAR10-Q and Ade corpus drug dosage datasets, where it obtained 86.84 % and 97% accuracy, respectively.
We present Covidex, a search engine that exploits the latest neural ranking models to provide information access to the COVID-19 Open Research Dataset curated by the Allen Institute for AI. Our system has been online and serving users since late March 2020. The Covidex is the user application component of our three-pronged strategy to develop technologies for helping domain experts tackle the ongoing global pandemic. In addition, we provide robust and easy-to-use keyword search infrastructure that exploits mature fusion-based methods as well as standalone neural ranking models that can be incorporated into other applications. These techniques have been evaluated in the ongoing TREC-COVID challenge: Our infrastructure and baselines have been adopted by many participants, including some of the highest-scoring runs in rounds 1, 2, and 3. In round 3, we report the highest-scoring run that takes advantage of previous training data and the second-highest fully automatic run.
The COVID-19 Open Research Dataset (CORD-19) is a growing resource of scientific papers on COVID-19 and related historical coronavirus research. CORD-19 is designed to facilitate the development of text mining and information retrieval systems over its rich collection of metadata and structured full text papers. Since its release, CORD-19 has been downloaded over 200K times and has served as the basis of many COVID-19 text mining and discovery systems. In this article, we describe the mechanics of dataset construction, highlighting challenges and key design decisions, provide an overview of how CORD-19 has been used, and describe several shared tasks built around the dataset. We hope this resource will continue to bring together the computing community, biomedical experts, and policy makers in the search for effective treatments and management policies for COVID-19.
We are presenting COVID-19Base, a knowledgebase highlighting the biomedical entities related to COVID-19 disease based on literature mining. To develop COVID-19Base, we mine the information from publicly available scientific literature and related public resources. We considered seven topic-specific dictionaries, including human genes, human miRNAs, human lncRNAs, diseases, Protein Databank, drugs, and drug side effects, are integrated to mine all scientific evidence related to COVID-19. We have employed an automated literature mining and labeling system through a novel approach to measure the effectiveness of drugs against diseases based on natural language processing, sentiment analysis, and deep learning. To the best of our knowledge, this is the first knowledgebase dedicated to COVID-19, which integrates such large variety of related biomedical entities through literature mining. Proper investigation of the mined biomedical entities along with the identified interactions among those, reported in COVID-19Base, would help the research community to discover possible ways for the therapeutic treatment of COVID-19.
suggested questions
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
