The statistical model of crystal melting represents BPS configurations of D-branes on a toric Calabi-Yau three-fold. Recently it has been noticed that an infinite-dimensional algebra, the quiver Yangian, acts consistently on the crystal-melting configurations. We physically derive the algebra and its action on the BPS states, starting with the effective supersymmetric quiver quantum mechanics on the D-brane worldvolume. This leads to remarkable combinatorial identities involving equivariant integrations on the moduli space of the quantum mechanics, which can be checked by numerical computations.
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