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Register a new userAccelerated Message Passing for Entropy-Regularized MAP Inference
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Added by
Jonathan Lee
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Maximum a posteriori (MAP) inference in discrete-valued Markov random fields is a fundamental problem in machine learning that involves identifying the most likely configuration of random variables given a distribution. Due to the difficulty of this combinatorial problem, linear programming (LP) relaxations are commonly used to derive specialized message passing algorithms that are often interpreted as coordinate descent on the dual LP. To achieve more desirable computational properties, a number of methods regularize the LP with an entropy term, leading to a class of smooth message passing algorithms with convergence guarantees. In this paper, we present randomized methods for accelerating these algorithms by leveraging techniques that underlie classical accelerated gradient methods. The proposed algorithms incorporate the familiar steps of standard smooth message passing algorithms, which can be viewed as coordinate minimization steps. We show that these accelerated variants achieve faster rates for finding $epsilon$-optimal points of the unregularized problem, and, when the LP is tight, we prove that the proposed algorithms recover the true MAP solution in fewer iterations than standard message passing algorithms.
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Graph neural networks have recently achieved great successes in predicting quantum mechanical properties of molecules. These models represent a molecule as a graph using only the distance between atoms (nodes). They do not, however, consider the spatial direction from one atom to another, despite directional information playing a central role in empirical potentials for molecules, e.g. in angular potentials. To alleviate this limitation we propose directional message passing, in which we embed the messages passed between atoms instead of the atoms themselves. Each message is associated with a direction in coordinate space. These directional message embeddings are rotationally equivariant since the associated directions rotate with the molecule. We propose a message passing scheme analogous to belief propagation, which uses the directional information by transforming messages based on the angle between them. Additionally, we use spherical Bessel functions and spherical harmonics to construct theoretically well-founded, orthogonal representations that achieve better performance than the currently prevalent Gaussian radial basis representations while using fewer than 1/4 of the parameters. We leverage these innovations to construct the directional message passing neural network (DimeNet). DimeNet outperforms previous GNNs on average by 76% on MD17 and by 31% on QM9. Our implementation is available online.
Graph neural networks (GNNs) are a powerful inductive bias for modelling algorithmic reasoning procedures and data structures. Their prowess was mainly demonstrated on tasks featuring Markovian dynamics, where querying any associated data structure depends only on its latest state. For many tasks of interest, however, it may be highly beneficial to support efficient data structure queries dependent on previous states. This requires tracking the data structures evolution through time, placing significant pressure on the GNNs latent representations. We introduce Persistent Message Passing (PMP), a mechanism which endows GNNs with capability of querying past state by explicitly persisting it: rather than overwriting node representations, it creates new nodes whenever required. PMP generalises out-of-distribution to more than 2x larger test inputs on dynamic temporal range queries, significantly outperforming GNNs which overwrite states.
We consider representation learning from 3D graphs in which each node is associated with a spatial position in 3D. This is an under explored area of research, and a principled framework is currently lacking. In this work, we propose a generic framework, known as the 3D graph network (3DGN), to provide a unified interface at different levels of granularity for 3D graphs. Built on 3DGN, we propose the spherical message passing (SMP) as a novel and specific scheme for realizing the 3DGN framework in the spherical coordinate system (SCS). We conduct formal analyses and show that the relative location of each node in 3D graphs is uniquely defined in the SMP scheme. Thus, our SMP represents a complete and accurate architecture for learning from 3D graphs in the SCS. We derive physically-based representations of geometric information and propose the SphereNet for learning representations of 3D graphs. We show that existing 3D deep models can be viewed as special cases of the SphereNet. Experimental results demonstrate that the use of complete and accurate 3D information in 3DGN and SphereNet leads to significant performance improvements in prediction tasks.
Bilevel optimization has recently attracted growing interests due to its wide applications in modern machine learning problems. Although recent studies have characterized the convergence rate for several such popular algorithms, it is still unclear how much further these convergence rates can be improved. In this paper, we address this fundamental question from two perspectives. First, we provide the first-known lower complexity bounds of $widetilde{Omega}(frac{1}{sqrt{mu_x}mu_y})$ and $widetilde Omegabig(frac{1}{sqrt{epsilon}}min{frac{1}{mu_y},frac{1}{sqrt{epsilon^{3}}}}big)$ respectively for strongly-convex-strongly-convex and convex-strongly-convex bilevel optimizations. Second, we propose an accelerated bilevel optimizer named AccBiO, for which we provide the first-known complexity bounds without the gradient boundedness assumption (which was made in existing analyses) under the two aforementioned geometries. We also provide significantly tighter upper bounds than the existing complexity when the bounded gradient assumption does hold. We show that AccBiO achieves the optimal results (i.e., the upper and lower bounds match up to logarithmic factors) when the inner-level problem takes a quadratic form with a constant-level condition number. Interestingly, our lower bounds under both geometries are larger than the corresponding optimal complexities of minimax optimization, establishing that bilevel optimization is provably more challenging than minimax optimization.
We address the problem of computing approximate marginals in Gaussian probabilistic models by using mean field and fractional Bethe approximations. We define the Gaussian fractional Bethe free energy in terms of the moment parameters of the approximate marginals, derive a lower and an upper bound on the fractional Bethe free energy and establish a necessary condition for the lower bound to be bounded from below. It turns out that the condition is identical to the pairwise normalizability condition, which is known to be a sufficient condition for the convergence of the message passing algorithm. We show that stable fixed points of the Gaussian message passing algorithm are local minima of the Gaussian Bethe free energy. By a counterexample, we disprove the conjecture stating that the unboundedness of the free energy implies the divergence of the message passing algorithm.
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