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Register a new userLongitudinal Self-Supervised Learning
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Qingyu Zhao
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Machine learning analysis of longitudinal neuroimaging data is typically based on supervised learning, which requires a large number of ground-truth labels to be informative. As ground-truth labels are often missing or expensive to obtain in neuroscience, we avoid them in our analysis by combing factor disentanglement with self-supervised learning to identify changes and consistencies across the multiple MRIs acquired of each individual over time. Specifically, we propose a new definition of disentanglement by formulating a multivariate mapping between factors (e.g., brain age) associated with an MRI and a latent image representation. Then, factors that evolve across acquisitions of longitudinal sequences are disentangled from that mapping by self-supervised learning in such a way that changes in a single factor induce change along one direction in the representation space. We implement this model, named Longitudinal Self-Supervised Learning (LSSL), via a standard autoencoding structure with a cosine loss to disentangle brain age from the image representation. We apply LSSL to two longitudinal neuroimaging studies to highlight its strength in extracting the brain-age information from MRI and revealing informative characteristics associated with neurodegenerative and neuropsychological disorders. Moreover, the representations learned by LSSL facilitate supervised classification by recording faster convergence and higher (or similar) prediction accuracy compared to several other representation learning techniques.
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How can neural networks trained by contrastive learning extract features from the unlabeled data? Why does contrastive learning usually need much stronger data augmentations than supervised learning to ensure good representations? These questions involve both the optimization and statistical aspects of deep learning, but can hardly be answered by analyzing supervised learning, where the target functions are the highest pursuit. Indeed, in self-supervised learning, it is inevitable to relate to the optimization/generalization of neural networks to how they can encode the latent structures in the data, which we refer to as the feature learning process. In this work, we formally study how contrastive learning learns the feature representations for neural networks by analyzing its feature learning process. We consider the case where our data are comprised of two types of features: the more semantically aligned sparse features which we want to learn from, and the other dense features we want to avoid. Theoretically, we prove that contrastive learning using $mathbf{ReLU}$ networks provably learns the desired sparse features if proper augmentations are adopted. We present an underlying principle called $textbf{feature decoupling}$ to explain the effects of augmentations, where we theoretically characterize how augmentations can reduce the correlations of dense features between positive samples while keeping the correlations of sparse features intact, thereby forcing the neural networks to learn from the self-supervision of sparse features. Empirically, we verified that the feature decoupling principle matches the underlying mechanism of contrastive learning in practice.
We propose self-adaptive training -- a unified training algorithm that dynamically calibrates and enhances training process by model predictions without incurring extra computational cost -- to advance both supervised and self-supervised learning of deep neural networks. We analyze the training dynamics of deep networks on training data that are corrupted by, e.g., random noise and adversarial examples. Our analysis shows that model predictions are able to magnify useful underlying information in data and this phenomenon occurs broadly even in the absence of emph{any} label information, highlighting that model predictions could substantially benefit the training process: self-adaptive training improves the generalization of deep networks under noise and enhances the self-supervised representation learning. The analysis also sheds light on understanding deep learning, e.g., a potential explanation of the recently-discovered double-descent phenomenon in empirical risk minimization and the collapsing issue of the state-of-the-art self-supervised learning algorithms. Experiments on the CIFAR, STL and ImageNet datasets verify the effectiveness of our approach in three applications: classification with label noise, selective classification and linear evaluation. To facilitate future research, the code has been made public available at https://github.com/LayneH/self-adaptive-training.
We introduce Bootstrap Your Own Latent (BYOL), a new approach to self-supervised image representation learning. BYOL relies on two neural networks, referred to as online and target networks, that interact and learn from each other. From an augmented view of an image, we train the online network to predict the target network representation of the same image under a different augmented view. At the same time, we update the target network with a slow-moving average of the online network. While state-of-the art methods rely on negative pairs, BYOL achieves a new state of the art without them. BYOL reaches $74.3%$ top-1 classification accuracy on ImageNet using a linear evaluation with a ResNet-50 architecture and $79.6%$ with a larger ResNet. We show that BYOL performs on par or better than the current state of the art on both transfer and semi-supervised benchmarks. Our implementation and pretrained models are given on GitHub.
One paradigm for learning from few labeled examples while making best use of a large amount of unlabeled data is unsupervised pretraining followed by supervised fine-tuning. Although this paradigm uses unlabeled data in a task-agnostic way, in contrast to common approaches to semi-supervised learning for computer vision, we show that it is surprisingly effective for semi-supervised learning on ImageNet. A key ingredient of our approach is the use of big (deep and wide) networks during pretraining and fine-tuning. We find that, the fewer the labels, the more this approach (task-agnostic use of unlabeled data) benefits from a bigger network. After fine-tuning, the big network can be further improved and distilled into a much smaller one with little loss in classification accuracy by using the unlabeled examples for a second time, but in a task-specific way. The proposed semi-supervised learning algorithm can be summarized in three steps: unsupervised pretraining of a big ResNet model using SimCLRv2, supervised fine-tuning on a few labeled examples, and distillation with unlabeled examples for refining and transferring the task-specific knowledge. This procedure achieves 73.9% ImageNet top-1 accuracy with just 1% of the labels ($le$13 labeled images per class) using ResNet-50, a $10times$ improvement in label efficiency over the previous state-of-the-art. With 10% of labels, ResNet-50 trained with our method achieves 77.5% top-1 accuracy, outperforming standard supervised training with all of the labels.
Longitudinal imaging is capable of capturing the static ana-to-mi-cal structures and the dynamic changes of the morphology resulting from aging or disease progression. Self-supervised learning allows to learn new representation from available large unlabelled data without any expert knowledge. We propose a deep learning self-supervised approach to model disease progression from longitudinal retinal optical coherence tomography (OCT). Our self-supervised model takes benefit from a generic time-related task, by learning to estimate the time interval between pairs of scans acquired from the same patient. This task is (i) easy to implement, (ii) allows to use irregularly sampled data, (iii) is tolerant to poor registration, and (iv) does not rely on additional annotations. This novel method learns a representation that focuses on progression specific information only, which can be transferred to other types of longitudinal problems. We transfer the learnt representation to a clinically highly relevant task of predicting the onset of an advanced stage of age-related macular degeneration within a given time interval based on a single OCT scan. The boost in prediction accuracy, in comparison to a network learned from scratch or transferred from traditional tasks, demonstrates that our pretrained self-supervised representation learns a clinically meaningful information.
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