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Register a new userFarmland Parcel Delineation Using Spatio-temporal Convolutional Networks
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Farm parcel delineation provides cadastral data that is important in developing and managing climate change policies. Specifically, farm parcel delineation informs applications in downstream governmental policies of land allocation, irrigation, fertilization, green-house gases (GHGs), etc. This data can also be useful for the agricultural insurance sector for assessing compensations following damages associated with extreme weather events - a growing trend related to climate change. Using satellite imaging can be a scalable and cost effective manner to perform the task of farm parcel delineation to collect this valuable data. In this paper, we break down this task using satellite imaging into two approaches: 1) Segmentation of parcel boundaries, and 2) Segmentation of parcel areas. We implemented variations of UNets, one of which takes into account temporal information, which achieved the best results on our dataset on farmland parcels in France in 2017.
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Hyperspectral images are of crucial importance in order to better understand features of different materials. To reach this goal, they leverage on a high number of spectral bands. However, this interesting characteristic is often paid by a reduced spatial resolution compared with traditional multispectral image systems. In order to alleviate this issue, in this work, we propose a simple and efficient architecture for deep convolutional neural networks to fuse a low-resolution hyperspectral image (LR-HSI) and a high-resolution multispectral image (HR-MSI), yielding a high-resolution hyperspectral image (HR-HSI). The network is designed to preserve both spatial and spectral information thanks to an architecture from two folds: one is to utilize the HR-HSI at a different scale to get an output with a satisfied spectral preservation; another one is to apply concepts of multi-resolution analysis to extract high-frequency information, aiming to output high quality spatial details. Finally, a plain mean squared error loss function is used to measure the performance during the training. Extensive experiments demonstrate that the proposed network architecture achieves best performance (both qualitatively and quantitatively) compared with recent state-of-the-art hyperspectral image super-resolution approaches. Moreover, other significant advantages can be pointed out by the use of the proposed approach, such as, a better network generalization ability, a limited computational burden, and a robustness with respect to the number of training samples.
Automatic surgical phase recognition is a challenging and crucial task with the potential to improve patient safety and become an integral part of intra-operative decision-support systems. In this paper, we propose, for the first time in workflow analysis, a Multi-Stage Temporal Convolutional Network (MS-TCN) that performs hierarchical prediction refinement for surgical phase recognition. Causal, dilated convolutions allow for a large receptive field and online inference with smooth predictions even during ambiguous transitions. Our method is thoroughly evaluated on two datasets of laparoscopic cholecystectomy videos with and without the use of additional surgical tool information. Outperforming various state-of-the-art LSTM approaches, we verify the suitability of the proposed causal MS-TCN for surgical phase recognition.
Colorectal cancer is the third most common cancer-related death after lung cancer and breast cancer worldwide. The risk of developing colorectal cancer could be reduced by early diagnosis of polyps during a colonoscopy. Computer-aided diagnosis systems have the potential to be applied for polyp screening and reduce the number of missing polyps. In this paper, we compare the performance of different deep learning architectures as feature extractors, i.e. ResNet, DenseNet, InceptionV3, InceptionResNetV2 and SE-ResNeXt in the encoder part of a U-Net architecture. We validated the performance of presented ensemble models on the CVC-Clinic (GIANA 2018) dataset. The DenseNet169 feature extractor combined with U-Net architecture outperformed the other counterparts and achieved an accuracy of 99.15%, Dice similarity coefficient of 90.87%, and Jaccard index of 83.82%.
For several skin conditions such as vitiligo, accurate segmentation of lesions from skin images is the primary measure of disease progression and severity. Existing methods for vitiligo lesion segmentation require manual intervention. Unfortunately, manual segmentation is time and labor-intensive, as well as irreproducible between physicians. We introduce a convolutional neural network (CNN) that quickly and robustly performs vitiligo skin lesion segmentation. Our CNN has a U-Net architecture with a modified contracting path. We use the CNN to generate an initial segmentation of the lesion, then refine it by running the watershed algorithm on high-confidence pixels. We train the network on 247 images with a variety of lesion sizes, complexity, and anatomical sites. The network with our modifications noticeably outperforms the state-of-the-art U-Net, with a Jaccard Index (JI) score of 73.6% (compared to 36.7%). Moreover, our method requires only a few seconds for segmentation, in contrast with the previously proposed semi-autonomous watershed approach, which requires 2-29 minutes per image.
The growing demand for head magnetic resonance imaging (MRI) examinations, along with a global shortage of radiologists, has led to an increase in the time taken to report head MRI scans around the world. For many neurological conditions, this delay can result in increased morbidity and mortality. An automated triaging tool could reduce reporting times for abnormal examinations by identifying abnormalities at the time of imaging and prioritizing the reporting of these scans. In this work, we present a convolutional neural network for detecting clinically-relevant abnormalities in $text{T}_2$-weighted head MRI scans. Using a validated neuroradiology report classifier, we generated a labelled dataset of 43,754 scans from two large UK hospitals for model training, and demonstrate accurate classification (area under the receiver operating curve (AUC) = 0.943) on a test set of 800 scans labelled by a team of neuroradiologists. Importantly, when trained on scans from only a single hospital the model generalized to scans from the other hospital ($Delta$AUC $leq$ 0.02). A simulation study demonstrated that our model would reduce the mean reporting time for abnormal examinations from 28 days to 14 days and from 9 days to 5 days at the two hospitals, demonstrating feasibility for use in a clinical triage environment.
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